Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops3g00390 | ATGTTCCCAACTCACAATCACATTCCTCTCTCTCTCTGTTCACTCGCAACTGCCAAATTCACTCTCGTGCCTTCTTCACAATCTGTTTTAATGGCACAGCCACCTTTGTCTGCAGAAACACCTCTGCCTGTTGCTCCTTCCACCCCTAATTCTGCTCCCACTCCGGCACCAGCACCGTTGGCATCATTCCCTTACAACATGCATCAAAATGTCAATCCTCCTGGGAATTCTCATCAGTCGTCTACTCACTCTGTAATGAAATCTAATTCGGCTGTTAATCCCATGGCTGTTCAACCTCCAGTTCCTGGTCTCCCTTCGCAAGCTGCCCCTTCTTTTTCATATCATATTTCCCAAAGTGGTTCAGCTTTTCCTAGTAATCAGCATGCGCAATCTAGCACGAACATGTCAGATTCTGTTGCACAAGATGTTAGTAAAGTGTCATCTGCATCGAGTATCCTACATCCTATCCCTGCTCATAATTCTATTTCCACAATGCCACCACCCTCTGACCCTAACTATCGCCCGGCTACTTCATGGATGCCGACTGCCCCAACTTTTCCTGTGCATCCTGTAATGCCTGGAAATCCTGCCCCCCCTGGATTTGCATCAGCTGCCATAATATCCTCCAATCCAGCTGCTCCATCCACAAGCACAGATTCTTCCTCAGCTGCAGCACCGAGACAAAATATGCCAACTGCAGCCATTGCATCAGATCCTACTGCTCCACAGAAAGGCTTACCCTATCCACCCGTACCTTCCATGGTTGCTCCCCCTCAGGGATTTTGGTTACAGCCTCCGCAGATGACTGGTGTACTCAGACCACCATTTCTTCAATATCCTGCTGCTTTTCCTGGTCCCTTTCCATTTCCAGCTCGTGGTGTTACTCTCCCTGCTGTTCCAGTGCCTGATTCTCAACCTCCTGGTGTTACTCCAGTGGGTCCTGCTGGTGGCGCTTCTGCAACTTCTGCTTCCGGTTATCAGCCGAGGGGAACAACTGGATTGCTGACAGAAGTAATTTCAGGGCATGCTGATGACAAGAAGAAATTAAATACTGTTGTTGCACAGAATGAGGATGCTGCCAATGATCAATTAGATGCCTGGGCTGCCCACAAGACTGAAACAGGAATTGTATACTATTATAATGCCTTGACAGGAGAATCAACATACAATAAACCTGCTGGCTTTAAAGGAGAGCCTCATCAAGTTTCTGTGCAGCCGACTCCAGTTTCGATGGTAGATTTGCCTGGTACTGATTGGCTCTTGGTCTCTACAAGTGATGGGAAAAAATATTACTACAACAATCGAACCAAGACAAGCTGCTGGCAAATCCCAAACGAGGTAGCTGAATTGAAAAAGAAGCAGGATGGTGATGTTACAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTGTACAGAACTCATCATCGGCACTGGATTTGATCAAGAAGAAGTTGCAGGACTCGGGAACACCTGTTGCTTCCTCTTCTATTCCTGCGCCATCAGTGCAAACAGGATCTGAATCAAATGGTTCAAAAACAACTGAATCTGCAGCTAAAGGCCTGCAAAATGATAATAACAAAGAAAAACAGAAAGATGCTAATGGTGATGCTAACGTCTCTGATACATCCTCTGATTCAGAAGATGAAGATAGTGGACCTTCAAAGGAGGAGCGCATCATTCAATTTAAGGAGATGCTTAAGGAGCGAGGAGTGGCACCGTTCTCAAAGTGGGAGAAAGAACTGCCAAAGATAGTATTTGATCCGCGTTTTAAGGCTATCCCAAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTACGTTAAAACTCGTGCGGAAGAAGAACGCAAAGAAAAACGTGCAGCACAGAAGGCTGCAATCGAGGGATTTAAGCAGTTACTGGATGAAGCCTCAGAGGATATTAATCACAGCACTGATTATCAAACTTTTCGAAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGACCGGGAGCACCTATTGAACGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAAGCTCAAGCAATGCGTGCAGCTGCTGCTGCCAGTTTTAAGTCAATGCTTAAAGAACAAGGGGATATAACGTTTAACTCCCGTTGGTCCAGGGTCAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCAGTTAGACACGAGGATAGGGAAGTTTTGTTCAATGAGTATATATCTGAATTGAAAGCTGCTGAACATGCAGCAGAACGAGAGACCAAAGCTAAAAGGGAGGAGCAGGAGAAGCTGCGTGAGAGAGAACGGCAGCTGCGCAAAAGGAAGGAAAGAGAGGAACAGGAAATGGAAAGGGTGCGACTAAAAATTCGAAGGAAAGAGGCAATTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGACCCTCTGGCCTCATGGACGGAATCTAAGCCTAAATTAGAAAAGGATCCTCAAGGACGTGCAACTAATCCTGATCTTGATCCTGCTGACACGGAAAAGCTCTTTCGGGAACATATAAAGATGCTTCAGGAACGTTGTGCACACGAGTTTAGAGCTCTCTTGGCTGAAGTCTTGACTTCTGAAGCCGCATCTCAAGAAACTGATGATGGGAAAACAGTGCTTAATTCATGGTCCACGGCTAAACGTCTTCTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCCTTGTGGCGCCGGTATGCAGAGGATATGCTGCGGCGGCAGAAGTCATCTCATCATGATTCAAAGGAAGAAAAACATACAGATGCTAAGGGTAGAAATTCTCTAGAATCTTTCAAACTGACATTGGAATCAGGGAGATCGCATGAGAGAAGATAA | 2973 | 0.4507 | MFPTHNHIPLSLCSLATAKFTLVPSSQSVLMAQPPLSAETPLPVAPSTPNSAPTPAPAPLASFPYNMHQNVNPPGNSHQSSTHSVMKSNSAVNPMAVQPPVPGLPSQAAPSFSYHISQSGSAFPSNQHAQSSTNMSDSVAQDVSKVSSASSILHPIPAHNSISTMPPPSDPNYRPATSWMPTAPTFPVHPVMPGNPAPPGFASAAIISSNPAAPSTSTDSSSAAAPRQNMPTAAIASDPTAPQKGLPYPPVPSMVAPPQGFWLQPPQMTGVLRPPFLQYPAAFPGPFPFPARGVTLPAVPVPDSQPPGVTPVGPAGGASATSASGYQPRGTTGLLTEVISGHADDKKKLNTVVAQNEDAANDQLDAWAAHKTETGIVYYYNALTGESTYNKPAGFKGEPHQVSVQPTPVSMVDLPGTDWLLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSVQNSSSALDLIKKKLQDSGTPVASSSIPAPSVQTGSESNGSKTTESAAKGLQNDNNKEKQKDANGDANVSDTSSDSEDEDSGPSKEERIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINHSTDYQTFRKKWGNDPRFEALDRKDREHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKEQGDITFNSRWSRVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAERETKAKREEQEKLRERERQLRKRKEREEQEMERVRLKIRRKEAITSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPDLDPADTEKLFREHIKMLQERCAHEFRALLAEVLTSEAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKSSHHDSKEEKHTDAKGRNSLESFKLTLESGRSHERR* | 991 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops3g00390 | 990 | Gene3D | - | 405 | 461 | - | - | |
| Rops3g00390 | 990 | ProSiteProfiles | FF domain profile. | 721 | 775 | IPR002713 | - | |
| Rops3g00390 | 990 | ProSiteProfiles | FF domain profile. | 824 | 881 | IPR002713 | - | |
| Rops3g00390 | 990 | SMART | FF_2 | 721 | 775 | IPR002713 | - | |
| Rops3g00390 | 990 | SMART | FF_2 | 824 | 881 | IPR002713 | - | |
| Rops3g00390 | 990 | SMART | FF_2 | 653 | 708 | IPR002713 | - | |
| Rops3g00390 | 990 | SMART | FF_2 | 586 | 640 | IPR002713 | - | |
| Rops3g00390 | 990 | SUPERFAMILY | FF domain | 714 | 780 | IPR036517 | - | |
| Rops3g00390 | 990 | ProSitePatterns | WW/rsp5/WWP domain signature. | 419 | 444 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | CDD | WW | 417 | 446 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | Pfam | FF domain | 889 | 945 | IPR002713 | - | |
| Rops3g00390 | 990 | Pfam | FF domain | 826 | 878 | IPR002713 | - | |
| Rops3g00390 | 990 | Pfam | FF domain | 592 | 637 | IPR002713 | - | |
| Rops3g00390 | 990 | Pfam | FF domain | 724 | 772 | IPR002713 | - | |
| Rops3g00390 | 990 | Pfam | FF domain | 656 | 704 | IPR002713 | - | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 209 | 228 | - | - | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 950 | 972 | - | - | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 117 | 143 | - | - | |
| Rops3g00390 | 990 | SUPERFAMILY | FF domain | 817 | 886 | IPR036517 | - | |
| Rops3g00390 | 990 | Pfam | WW domain | 366 | 392 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | CDD | WW | 367 | 392 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 84 | 976 | IPR045148 | GO:0003712|GO:0070063 | |
| Rops3g00390 | 990 | Gene3D | FF domain | 572 | 648 | IPR036517 | - | |
| Rops3g00390 | 990 | Gene3D | FF domain | 649 | 712 | IPR036517 | - | |
| Rops3g00390 | 990 | Gene3D | FF domain | 713 | 796 | IPR036517 | - | |
| Rops3g00390 | 990 | ProSiteProfiles | FF domain profile. | 586 | 640 | IPR002713 | - | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 156 | 178 | - | - | |
| Rops3g00390 | 990 | SMART | ww_5 | 362 | 394 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | SMART | ww_5 | 414 | 446 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 950 | 990 | - | - | |
| Rops3g00390 | 990 | FunFam | Pre-mRNA-processing protein 40C | 821 | 881 | - | - | |
| Rops3g00390 | 990 | SUPERFAMILY | WW domain | 418 | 450 | IPR036020 | GO:0005515 | |
| Rops3g00390 | 990 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 419 | 446 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | ProSiteProfiles | FF domain profile. | 653 | 708 | IPR002713 | - | |
| Rops3g00390 | 990 | FunFam | Pre-mRNA-processing protein 40C isoform C | 649 | 712 | - | - | |
| Rops3g00390 | 990 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 361 | 394 | IPR001202 | GO:0005515 | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 847 | 869 | - | - | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 519 | 552 | - | - | |
| Rops3g00390 | 990 | SUPERFAMILY | FF domain | 581 | 646 | IPR036517 | - | |
| Rops3g00390 | 990 | SUPERFAMILY | FF domain | 882 | 954 | IPR036517 | - | |
| Rops3g00390 | 990 | SUPERFAMILY | FF domain | 645 | 714 | IPR036517 | - | |
| Rops3g00390 | 990 | Gene3D | FF domain | 882 | 948 | IPR036517 | - | |
| Rops3g00390 | 990 | Gene3D | FF domain | 821 | 881 | IPR036517 | - | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 519 | 587 | - | - | |
| Rops3g00390 | 990 | FunFam | pre-mRNA-processing protein 40C isoform X1 | 571 | 648 | - | - | |
| Rops3g00390 | 990 | SUPERFAMILY | WW domain | 366 | 396 | IPR036020 | GO:0005515 | |
| Rops3g00390 | 990 | Coils | Coil | 773 | 828 | - | - | |
| Rops3g00390 | 990 | MobiDBLite | consensus disorder prediction | 784 | 813 | - | - | |
| Rops3g00390 | 990 | FunFam | Pre-mRNA-processing protein 40C | 713 | 787 | - | - | |
| Rops3g00390 | 990 | FunFam | Pre-mRNA-processing protein 40C | 883 | 948 | - | - | |
| Rops3g00390 | 990 | Gene3D | - | 362 | 404 | - | - | |
| Rops3g00390 | 990 | ProSitePatterns | WW/rsp5/WWP domain signature. | 367 | 392 | IPR001202 | GO:0005515 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops3g00390 | K12824 | - | gmx:100816454 | 1431.39 |