Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00378 ATGAGAAAAGGATTCAGTCTCTTCATTTCTCTCTTTAACCGTAACCCTCCGTTAGCGCCGCCACCGTCACTCCATTTTCGCGGCAGATCCCTTATTTCTCCTTCCGCCACCGCCGCAGCCATGCCAGGAGCCGACGCACTCAATTTGGAGTGGCCGGCGAAGCGCGTAAGGGACACTTTCATAAAGTTCTTCGAAGACAAGAACCATTTCAACTGGAAGTCTAGCCCTGTTGTCCCCTTCAACGACCCTACCCTCCTTTTCGCTAACGCTGGGATGAACCAGTACAAGCCAATCTTTTTGGGAACTGTAGATCCCAACACTGCATTGAGCAAGCTCTCTCGTGCTTGTAATACCCAAAAATGCATTCGAGCTGGTGGTAAACACAATGATCTTGATGACGTAGGGAAAGATACCTACCATCACACCTTCTTTGAGATGCTGGGTAATTGGTCCTTTGGGGATTACTTTAAAGTAGAAGCCATTAGCTGGGCATGGGAACTTCTAACCAAAGTTTATAAATTACCAACAGATCGCTTTTATGCCACATATTTTGGTGGTGATGAGAAGTCTGGTCTTGCCCCTGATATTGAGGCTAGAGATATATGGTTAAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGTCCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGAAGCTGCATCATTGGTTAATAATGATGATCCGACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAACAGGGAGGCTGATGGATCTCTTAAACCTCTTCCTGCAAAGCATGTTGATACTGGCTTGGGTTTTGAACGATTGACCTCTATACTACAGAACAAAATGAGCAATTATGACACTGATGTCTTCCTGCCTATTTTTGATGCTATTCAGCTGGCAACTGGTGCTCGGCCATATTCTGGGAAAGTTGGACCAGATGATGCAGATAAAGTTGACATGGCTTACAGGGTTGTTGCAGATCACATCAGAACTCTGTCATTTGCCATTGCTGATGGCTCTCGTCCTGGTAATGAGGGTCGTGAGTATGTTCTGAGGCGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAAGGGTTTTTCAATGGGCTTGTAAATGTCGTGGTGAATGTGATGGGCGATGTTTTCCCTGAGCTAAAACTACAGGAAGTGCACATTAGGGATGTAATTAAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTGATTAAGGGGATTGAGAAATTTGAGACAGCTGTTCGACATGTTCAGGGAAAGACACTGAGCGGGGAGGCAACATTTGTCTTGTGGGATACATATGGGTTCCCGTTAGATCTCACTCAGCTGATGGCTGAAGAAAAGGGATTACTTGTCGATGTCGACGGTTTTAATAGTGCTATGGAAGCTGCAAGAGAGAGATCAAGAAATGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGATGCTGATGCTACGTCAGCATTGCACAAAAGGGGCATAGCTCCAACAGATGATAGCTTCAAATATGTTTGGTTCAAGGACCATGAGAGTGTGGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATTCTGTTAATAATACTGATGGTGATGTTGGCGTAGTTCTGGAAACTACAAGCTTTTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTCGAGGGTCAACGTGCTTCATTTCAAGTTCGTAATGTTCAAGTTTATGGAGGTTTCATTCTTCATATCGGTAATGGGACTGGTATCTCTGTTGGCGACAAAGTAGCATGCAAGGTTGATTATGAAAGACGTGCCCTTATAGCCCCTAACCATACCTGCACACACATGTTAAATTTTGCTCTTAGGGAAGTCCTTGGCAATCATGTTGACCAGAAAGGATCTATTGTTCTCCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTGATAATTTGAGGAGAATTGAGTCAATCGTTAATGAGCAAATTAAAGCTGAATTGGATGTAAGTGCAAAGGAGGCAACTCTTGCTGAAGCCAAGAGTATCAATGGTTTGCGAGCTGTTTTTGGAGAAGTCTATCCTGATCCGGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTCCTTGCTGACCCCGGGAATGAAAACTGGTTATCTATTTCATCAGAATTATGCGGCGGCACACATATTTCAAACACACGAGAGGCTAAAGCTTTTGCACTTTTATCTGAGGAGGGAATTGCAAAAGGAATCCGCAGAATAACAGCTGTCACAACTGATCGTGCTTATGATGCAATGAAAATGGCAGATGAATTTGAGCAGCAAGTAAATGATGCAGCTAAGTTGGAAGGAAATTTGCTGGAAGAGAAAGTTTCATCTCTGAAAAGCAATGTGGAAACATTATCAATCCCTGCAGCCAAGAAAGCTGACATCAAGACCAAGATAGTTCGACTTCAGGATCAAGTGAGAAAAGCACAAAAGCAGGTTGCTGAAGAAAACAAACGTAAAGCTGTAATGATCACAGCTGAGAAGGCTGAACTTGCTGCTTCAGACAGGAAATCTTTTTGCATATCTCATGTTAATGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCAGTTACAAAAGTCATGGACCAGAAGGGGTTATCTGTGATGGTTTTTAGCACCGATGAATCTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCTGAGAAAGGAGATAAAGGTAAGCTGGATGTGTCCGAGTGGCTAAGTAATGCTTTGGGGCCTCTAAAAGGGAGATGTGGCAAAGGAAAAGGAGGTCTTGCGACAGGACAGGGTACTGATGCATCACACGTAAATGAGGCCATGGATCTTGCAGCAAAATTTGCATCCATGAAATTGACTTAA 2976 0.4365 MRKGFSLFISLFNRNPPLAPPPSLHFRGRSLISPSATAAAMPGADALNLEWPAKRVRDTFIKFFEDKNHFNWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTVDPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAISWAWELLTKVYKLPTDRFYATYFGGDEKSGLAPDIEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNREAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVNVVVNVMGDVFPELKLQEVHIRDVIKEEEESFGRTLIKGIEKFETAVRHVQGKTLSGEATFVLWDTYGFPLDLTQLMAEEKGLLVDVDGFNSAMEAARERSRNAQTKQAGGAIVMDADATSALHKRGIAPTDDSFKYVWFKDHESVVKAIYTGSEFVDSVNNTDGDVGVVLETTSFYAEQGGQIFDTGSLEGQRASFQVRNVQVYGGFILHIGNGTGISVGDKVACKVDYERRALIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAELDVSAKEATLAEAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNENWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKMADEFEQQVNDAAKLEGNLLEEKVSSLKSNVETLSIPAAKKADIKTKIVRLQDQVRKAQKQVAEENKRKAVMITAEKAELAASDRKSFCISHVNVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVVCAGVPEKGDKGKLDVSEWLSNALGPLKGRCGKGKGGLATGQGTDASHVNEAMDLAAKFASMKLT* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00378 991 FunFam Alanine--tRNA ligase 525 622 - -
Rops3g00378 991 Pfam DHHA1 domain 846 985 IPR003156 GO:0003676
Rops3g00378 991 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 304 504 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Rops3g00378 991 Gene3D - 624 801 - -
Rops3g00378 991 SUPERFAMILY Class II aaRS and biotin synthetases 53 303 IPR045864 -
Rops3g00378 991 SMART tRNA_SAD_4 725 784 IPR012947 GO:0004812|GO:0005524|GO:0043039
Rops3g00378 991 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 725 783 IPR012947 GO:0004812|GO:0005524|GO:0043039
Rops3g00378 991 Hamap Alanine--tRNA ligase [alaS]. 51 990 IPR023033 GO:0004813
Rops3g00378 991 Gene3D Bira Bifunctional Protein; Domain 2 52 300 IPR045864 -
Rops3g00378 991 PANTHER ALANYL-TRNA SYNTHETASE 46 988 - -
Rops3g00378 991 NCBIfam alanine--tRNA ligase 56 968 IPR002318 GO:0000166|GO:0005737
Rops3g00378 991 SUPERFAMILY ThrRS/AlaRS common domain 623 801 IPR018163 GO:0000166
Rops3g00378 991 PRINTS Alanyl-tRNA synthetase signature 341 357 IPR002318 GO:0000166|GO:0005737
Rops3g00378 991 PRINTS Alanyl-tRNA synthetase signature 129 140 IPR002318 GO:0000166|GO:0005737
Rops3g00378 991 PRINTS Alanyl-tRNA synthetase signature 257 268 IPR002318 GO:0000166|GO:0005737
Rops3g00378 991 PRINTS Alanyl-tRNA synthetase signature 365 378 IPR002318 GO:0000166|GO:0005737
Rops3g00378 991 PRINTS Alanyl-tRNA synthetase signature 284 297 IPR002318 GO:0000166|GO:0005737
Rops3g00378 991 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 51 797 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Rops3g00378 991 FunFam Alanine--tRNA ligase, cytoplasmic 624 799 - -
Rops3g00378 991 Gene3D - 880 986 - -
Rops3g00378 991 Pfam tRNA synthetases class II (A) 56 627 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Rops3g00378 991 FunFam Alanine--tRNA ligase 879 986 - -
Rops3g00378 991 CDD AlaRS_core 53 299 - -
Rops3g00378 991 Gene3D - 535 623 - -
Rops3g00378 991 Coils Coil 837 864 - -
Rops3g00378 991 SUPERFAMILY Translation proteins 558 623 IPR009000 -
Rops3g00378 991 FunFam Alanine--tRNA ligase, cytoplasmic 50 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00378 Rops-Chr3 4738921 4751345 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00378 K01872 - gmx:100788271 1717.21