Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00377 ATGGCGAAAGAGGGAAGTGACATTGATGACGAAGTGAATGTTGCAATGGAAGAAGAAGAAGAGCGAGAAGAAGAAGCAGAAGAAGAAGAAAACGCAGCAGAAGCGGAAGAAGAAGATGACGTGGACGAAGAAGAAGAGGAAGGTGAATACACTTTCAGGTTCAAACATGGTATGAGCCCTTTGGACTTCGTCGATAATAACGATTCTGGTGTTCAACGCTATCAGCAATTCGAACGCCTTGAATATGAAGCTCTCGCCGATAAAAAGCGAAAAGCAATTGAACAATCCCAACGTGAAGGAACTTCTACAAAGAAGGTAAGGGAAGATGGTATTTCTGGGGCAAGCATGGCTGAGATAATGGAAGTAATGAATTATGGTGCGCGCAGGAGATCAAGAAAGCATAAAAAAAGAGGTAGGCGAAAAGGAACAAAGAACAAACTCAACCCTAAGTTGACACAAATGCTGGGTGATGCCACACTCCACTATGCACGTGGCCATTATGACCAGGCTATATCTGTGTTGCATGAAGTTGTTAGGCTGGCACCAAATTTGCCTGACTCGTATCACACCCTTGGACTTGTCTATAGTGAACTTAAGGATTACAAAAGAGCTATGGATTTTTACATGATTGCTGCTCATTTGACTCCAAAAGAATCATCTCTTTGGAAATTGCTTTTTACCTGGTCCATAGAACAAGGTGATATTGGCCAAGCCGGTTATTGTCTTTCAAAAGCAATAACAGCAGATCCCAAAGATATTACTCTTAGAAGTCATCGTGCAATGCTTTATGTTGAACTTCAAGATTATCAAAAAGCTGCTGTGGCATATGAGCAAGCACATCAACTTTGTCGTGAAAATGTTGATGCACTAAAAGCAGCAGCTAAGTTCTACCAAAAATGTGGTCAAGTTGAATACTCAATTCGCATTCTTGAAGACTATCTGAAGAGTCAACCAGATGGAGCAAATGCAAGTGTAGTTAATCAACTGAGTGCCATATTGATGGAAACTAAGGCGCATGACAGAGCTCTTCAGTACATCGAACATGCTCGAGTGGTAAATTCAGGAAAAGAATTGCCTTTGAATTTGAAAATTAAAGCTGGAATCTGCCATGTTCATCTTGGAAACATGGAGACGGCTCAGGTTTTCTTTAATGATTTGAGATCAGAGAATGCAAGCGAGCACGTTGACTTGGTCACCGAGGTTGCAGACTCATTAATGGGGCTTGAACATTATAATTCTGCATTGAATTATTATCTGATGTTGGAAGGACATAATGGAAATGAAAATGGTCTTCTGCATCTGAAAATAGCTAAATGTTATCTATCCTTGAAAGAAAGGTTACGAGCAATTCTCTTTTTTTCCAAAGCCCTAGAAACACTACAAGATGATGTAGATGCACGCATAACTTTAGCTACCCTTCTGCTTGAAGAAGGGAAAGAAGATGAAGCCATTTGCTTACTGTCTCCTCCAAAGGATTCTGACTCTGGCGAAGCACATTCTGAAAAGTCAAATAGATGGTGGGTTGATGTAAGAATAAAACTGAAGCTCGGCAACATATATCGGATTAGAGGGATGCTTGATGATTTTGTGGATGTAATTTTCCCTTTGATACGTGAATCACTGTATGTTGCATCTCTTAGACAAAAGGGTAAATCAAAAAAGCGTCTCTCCAGAAAAGATCTGGTTGAAAGGGTTAGGGTACTGGATAGTCAGGAAAAGGATAATGTATTTCAAGGATTCAGGCCGATAGCTACAGCATCTGATCTGTTGAAAGCTTCCAGGGCCAAAAAGTTGCTCCAGAAGAAGGCAATTCAGAAAGAGAAAAAAAAGGCTGAGGCACTGGCATCTGGAATTGACTGGCTAAGTGGTGATTCAGATGATGAACCTCGGAAAGTAAACACAGAACCTCCCTTGTGTAATCTTCTCAAAGATGAAGAACATCACCAGCTAATCATTGATTTGTGCAAGGCATTAGCATCCTTGCGAAGGTATTGGGAAGCATTGGAGATTATCAATCTCACTCTGAGATTAGCTCATACCTCTCTATCTGCTGAGAAGAAAGAGGAGCTCCGATCTCTTGGAGCTCAAATGGCATACCACACCACAGATCCTAAACATGGATTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCGAGATTGGAAAACCGAGATACAAGACACTACAAATTCGTTCGTGCTATGCAAGGAAAATTTTTGGATTGTGTGCCTCCTATCCTTATTTCTGGGCATCAGTTTACCATATTTAGCCATCATCAAGATGCGGCAAGGAAATACCTTGAAGCTTATAAACTTTTGCCCGAGAATCCCTTGGTTAATCTTTGTGTTGGAACAGCCTTGATCAACTTGGCGTTGGGTTTCAGACTTCAAAATAAGCATCAGTGTGTCGTACAAGGTTTAGCATTCCTTTACAATAATTTGAGGATCTGTGAGAACAGCCAGGAGTCCTTGTACAACATAGCTCGGGCATTACATCATGTTGGCCTGGTAACTCTGGCAGCTTTTTATTATGAGAAAGTGATTGCTATTCGCGAGAAAGACTATCCAATTCCAAAACTTCCCAATGAAAATCCAGATGTCATGGAAAATTATAAACCTGGTTACTGTGACCTTCGCAGAGAGGCGGCTTACAATCTGCATTTAATCTACAAAAGAAGTGGAGCTCTTGATCTTGCCAGGCAAGTTCTAAAAGATCATTGTTCTTTGTGA 2772 0.4076 MAKEGSDIDDEVNVAMEEEEEREEEAEEEENAAEAEEEDDVDEEEEEGEYTFRFKHGMSPLDFVDNNDSGVQRYQQFERLEYEALADKKRKAIEQSQREGTSTKKVREDGISGASMAEIMEVMNYGARRRSRKHKKRGRRKGTKNKLNPKLTQMLGDATLHYARGHYDQAISVLHEVVRLAPNLPDSYHTLGLVYSELKDYKRAMDFYMIAAHLTPKESSLWKLLFTWSIEQGDIGQAGYCLSKAITADPKDITLRSHRAMLYVELQDYQKAAVAYEQAHQLCRENVDALKAAAKFYQKCGQVEYSIRILEDYLKSQPDGANASVVNQLSAILMETKAHDRALQYIEHARVVNSGKELPLNLKIKAGICHVHLGNMETAQVFFNDLRSENASEHVDLVTEVADSLMGLEHYNSALNYYLMLEGHNGNENGLLHLKIAKCYLSLKERLRAILFFSKALETLQDDVDARITLATLLLEEGKEDEAICLLSPPKDSDSGEAHSEKSNRWWVDVRIKLKLGNIYRIRGMLDDFVDVIFPLIRESLYVASLRQKGKSKKRLSRKDLVERVRVLDSQEKDNVFQGFRPIATASDLLKASRAKKLLQKKAIQKEKKKAEALASGIDWLSGDSDDEPRKVNTEPPLCNLLKDEEHHQLIIDLCKALASLRRYWEALEIINLTLRLAHTSLSAEKKEELRSLGAQMAYHTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRAMQGKFLDCVPPILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLRICENSQESLYNIARALHHVGLVTLAAFYYEKVIAIREKDYPIPKLPNENPDVMENYKPGYCDLRREAAYNLHLIYKRSGALDLARQVLKDHCSL* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00377 923 SUPERFAMILY TPR-like 761 869 IPR011990 GO:0005515
Rops3g00377 923 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 9 922 IPR039340 GO:0006383
Rops3g00377 923 Coils Coil 8 47 - -
Rops3g00377 923 Gene3D Tetratricopeptide repeat domain 556 923 IPR011990 GO:0005515
Rops3g00377 923 FunFam General transcription factor 3C polypeptide 3 isoform A 115 358 - -
Rops3g00377 923 MobiDBLite consensus disorder prediction 128 146 - -
Rops3g00377 923 Coils Coil 79 99 - -
Rops3g00377 923 MobiDBLite consensus disorder prediction 11 47 - -
Rops3g00377 923 MobiDBLite consensus disorder prediction 1 58 - -
Rops3g00377 923 MobiDBLite consensus disorder prediction 125 147 - -
Rops3g00377 923 SUPERFAMILY TPR-like 366 484 IPR011990 GO:0005515
Rops3g00377 923 ProSiteProfiles TPR repeat profile. 185 218 IPR019734 GO:0005515
Rops3g00377 923 Pfam Tetratricopeptide repeat 158 216 - -
Rops3g00377 923 FunFam General transcription factor 3C polypeptide 3 554 922 - -
Rops3g00377 923 SMART tpr_5 323 356 IPR019734 GO:0005515
Rops3g00377 923 SMART tpr_5 185 218 IPR019734 GO:0005515
Rops3g00377 923 SMART tpr_5 835 868 IPR019734 GO:0005515
Rops3g00377 923 SMART tpr_5 430 463 IPR019734 GO:0005515
Rops3g00377 923 SMART tpr_5 151 184 IPR019734 GO:0005515
Rops3g00377 923 SMART tpr_5 253 286 IPR019734 GO:0005515
Rops3g00377 923 Gene3D Tetratricopeptide repeat domain 359 550 IPR011990 GO:0005515
Rops3g00377 923 Gene3D Tetratricopeptide repeat domain 138 357 IPR011990 GO:0005515
Rops3g00377 923 SUPERFAMILY TPR-like 167 386 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00377 K15201 - gmx:100804533 1420.6