Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00368 ATGATGATGAAGAACCTGAACATCTCTTTGTGCATGCTTCTCATAGCACTGGTGCACTTAGGGGCAAGTGTACCCTTGAATTTCAACTATGGTGATGCTCTTGACAAGAGCTTGATGTTCTTTGAAGCACAAAGGTCTGGTAAATTACCATTGCAGCAACGAGTCAAATGGCGTGGTGATTCTGGTCTCCAAGATGGATTTCAGCAAGGAGTAAACTTGGTGGGTGGGTACTATGATGCAGGAGATCATGTGAAGTTTGGACTTCCAATGGCCTACAGTGTCACAATGCTTGCATGGGGAGCCATTGAGTTTGGTAAGGAAATCACAGACTTAAACCAAATGGGACATACATTATGGGCCATTAAATGGGGAACTGACTACTTCATCAAAGCACATCCTCAGCCTAATGTTCTTTGGGAACAGGTGGGTGATGGAGCTTCTGATCACTACTGTTGGGAGCGTGCTGAAGACATGACAACTTCAAGAACTGCCTATAAAATTGATGAAGAACACCCTGGCTCAGATCTTGCAGGTGAAACTGCGGCTGCATTGGCTGCTGCAGCCATAGCTTTCAGGCCCTACAACTCTTCTTACTCTAATCTCCTGCTTGTTCATGCAAAGCAGCTCTTCACATTTGCAGATAGGTTCAGAGGTCTATATGATGACTCCATATCTTGTGCTCAGCAATTCTATACTTCTTCCGGTTACTCAGATGAATTGCTATGGGCTGCTTCTTGGCTGTATCGAGCAACTGGTGATGAATACTACCTAAAGTATGCAATAGATAATGCAGTATATATGGGTGGAACTGGCTGGGCGGTGAAAGAGTTCTCTTGGGACAACAAATATGCTGGTGTACAAATCCTCCTATCAAAGGTAATGCAAGAAGGCAAGTCTGGTCCTTACGCCTCTACACTAAAGCAATATCAGGCCAAAGCAGATTATTTTGCCTGCGCCTGCTTGCAAAAGAATGATGATTACAATGTCCAGAAAACGCTAGGTGGCTTACTATACGTGCATGAATGGAACAACTTGCAGTATGTTTCTTCTGCTGCTTTTCTTTTAGCTGTTTACTCTAATTATCTCTCAGCGGCAAAAGCACAGCTCAACTGCCCAGATGGACAAATTCAACCCCAGGAGCTACTCAATTTTGCCAAGTCACAGGCTGACTATATCCTTGGTAAAAACCCAGAGGATATGAGCTACTTGGTTGGATATGGACCAAAATATCCTCTTCATGTTCACCACAGAGGTGCTTCCATTGCTTCGATCTTTTCTCTTCATTCCGAGGTTGGCTGCATCCAAGGATTTGACACATGGTATAGCAGCCCTGAGCCAAATCCTAATGTCATCTGTGGTGGCCTTGTGGGGGGTCCAGATAAAAATGATGACTTCTCTGATGATAGATCCAATTATGAACAAACTGAGCCTACACTTTCAGGTGCAGCTCCTCTTGTAGGCATCTTTGCTAAACTGCAGAGTTTATATGGTAATATAGGTTCCTACCATGATGAATCACCAGTGCCCCAGCAAAAAACACCAAGTGCACTAGCACATAAAACACCAGAAGCAGGTGCCCCAGTTGAATTCCTTCACTCAATTTCTAGCTCATGGACTGTTGGAGCTACAACTTATTACCGTCACAAGGTGATAATCAAGAACACTTCTTTGAAGCCAATCTCAGATCTTAAGTTGGTGATTGAGAATCTCTCAGGCTCTTTATGGGGTCTCTCTCCAGCAGGAGAGAACACCTATGAACTTCCCCAATGGCTCAAGGTCTTAAATCCTGGTTCTGAGTGTATGTTTGTTTATGTTCAAGGCGGACCCCAGGCAAAAATCTCGATTCAAAGCTTCCATTGA 1860 0.4403 MMMKNLNISLCMLLIALVHLGASVPLNFNYGDALDKSLMFFEAQRSGKLPLQQRVKWRGDSGLQDGFQQGVNLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFGKEITDLNQMGHTLWAIKWGTDYFIKAHPQPNVLWEQVGDGASDHYCWERAEDMTTSRTAYKIDEEHPGSDLAGETAAALAAAAIAFRPYNSSYSNLLLVHAKQLFTFADRFRGLYDDSISCAQQFYTSSGYSDELLWAASWLYRATGDEYYLKYAIDNAVYMGGTGWAVKEFSWDNKYAGVQILLSKVMQEGKSGPYASTLKQYQAKADYFACACLQKNDDYNVQKTLGGLLYVHEWNNLQYVSSAAFLLAVYSNYLSAAKAQLNCPDGQIQPQELLNFAKSQADYILGKNPEDMSYLVGYGPKYPLHVHHRGASIASIFSLHSEVGCIQGFDTWYSSPEPNPNVICGGLVGGPDKNDDFSDDRSNYEQTEPTLSGAAPLVGIFAKLQSLYGNIGSYHDESPVPQQKTPSALAHKTPEAGAPVEFLHSISSSWTVGATTYYRHKVIIKNTSLKPISDLKLVIENLSGSLWGLSPAGENTYELPQWLKVLNPGSECMFVYVQGGPQAKISIQSFH* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00368 619 PANTHER ENDO-1,4-BETA-GLUCANASE 13 494 - -
Rops3g00368 619 Gene3D - 26 496 IPR012341 GO:0005975
Rops3g00368 619 SMART CBM49_2 528 607 IPR019028 GO:0030246
Rops3g00368 619 Pfam Carbohydrate binding domain CBM49 529 606 IPR019028 GO:0030246
Rops3g00368 619 Pfam Glycosyl hydrolase family 9 30 488 IPR001701 GO:0004553|GO:0005975
Rops3g00368 619 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Rops3g00368 619 SUPERFAMILY Six-hairpin glycosidases 27 498 IPR008928 GO:0005975
Rops3g00368 619 FunFam Endoglucanase 26 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00368 Rops-Chr3 4609412 4613365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00368 28 619 Glycoside Hydrolase AT1G48930 69.783 0.0 831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00368 K01179 - gmx:100802420 1093.57