Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00358 ATGAGAGGCCTTCTAGGGGGCACGAAGGTGATAGCGAACAAGCTATTCCATGGAAGGAGAAGTGAATTGGCACAATGCAATCGTGCATATAGCTTAATCCCAATGGTAATAGAGCACTCTTCCAGAGGAGAGAGAGCTTACGACATCTTCTCTCGTCTTCTCAAAGAGCGCATCATTTGCATCAACGGACCCATCTCAGACGACACCTCCCATGTCGTCGTTGCGCAGCTCCTTTTCCTCGAATCCGAAAACCCTTCCAAGCCAATCCACATGTACCTCAATTCTCCTGGTGGCGCCGTCACCGCAGGGCTTGCAATTTATGATACTATGCAGTACATTCGGTCTCCAATTAACACAATCTGTTTGGGTCAAGCTGCATCCATGGGTTCTCTGCTATTGGCTGCTGGTGCCAAGGGTCAGAGGCGTGCTCTTCCAAATGCAACAGTCATGATTCACCAACCTTCTGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCATACCAAGCAGATTGTTCGGGTTTGGGATTCGTTGAATGAGTTGTATGCTAAGCACACTGGCCAGCCTATTGATGTTATTCAGAAGAATATGGATAGGGATTATTTCATGACTGCGGAAGAGGCCAGGGAGTTCGGGATTATTGATGAGGTTATTGATCAGAGACCAATGACTTTGGTTTCTGATGCTGTTGGTAATGAAGGCAAAGATAAAGGTTCGAATTAG 726 0.4669 MRGLLGGTKVIANKLFHGRRSELAQCNRAYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTSHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLAAGAKGQRRALPNATVMIHQPSGGYSGQAKDIAIHTKQIVRVWDSLNELYAKHTGQPIDVIQKNMDRDYFMTAEEAREFGIIDEVIDQRPMTLVSDAVGNEGKDKGSN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00358 241 Pfam Clp protease 42 221 IPR023562 -
Rops3g00358 241 ProSitePatterns Endopeptidase Clp histidine active site. 141 154 IPR033135 -
Rops3g00358 241 SUPERFAMILY ClpP/crotonase 40 223 IPR029045 -
Rops3g00358 241 Gene3D - 20 226 - -
Rops3g00358 241 ProSitePatterns Endopeptidase Clp serine active site. 119 130 IPR018215 -
Rops3g00358 241 CDD S14_ClpP_2 48 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00358 241 PRINTS Clp protease catalytic subunit P signature 119 136 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00358 241 PRINTS Clp protease catalytic subunit P signature 48 63 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00358 241 PRINTS Clp protease catalytic subunit P signature 140 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00358 241 PRINTS Clp protease catalytic subunit P signature 88 108 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00358 241 PRINTS Clp protease catalytic subunit P signature 197 216 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00358 241 FunFam ATP-dependent Clp protease proteolytic subunit 31 223 - -
Rops3g00358 241 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 32 222 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00358 241 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 21 226 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00358 Rops-Chr3 4459594 4461108 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00358 K01358 - gmx:100782585 409.453