Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00348 ATGGTTCCACCGGCGGTGCAATCGCCGAACCCACAAGTGACGCAACAGTTCTTAAGCTCCGTTCTATCACAGCGGGGCCCATCGGCGGTTCCTTACTCCGAGGACACAAAGTGGCTGATCCGTCAGCACCTGGTGGCTCTAACCACCGCGTTCCCTTCTCTAGAACCCAAAACGGCGACGTTTACCCACAACGATGGACGCTCCGTTAACCTCCTCCAAGCCGATGGAACCATACCCATGACCTTCCAAGGTGTAACCTACAACATCCCCGTTGTAATCTGGCTCATGGAATCGTACCCTCGCCACCCACCTTGTGCTTACGTGAACCCCACGAGGGATATGATCATCAAACGCCCTCACCCTCATGTTAACCCTTCTGGGTTGGTCTCTGTTCCTTATTTGCATAATTGGATCTACCCAAGTTCCAATTTGGTTGATCTTGTTCTCTCTTTGAGCCATCTCTTTGGTCGTGACCCTCCTCTTTATTCCCAACGTAGACCTAATCAAAATCCTAATCCCAATCCAAATTTCCAAACTTTATCATCTAATATTCCTAATTCTTCATCTGGGTATCCCAGGACTTACCCTCCTTCCCCTTATGCTTCTGCTTCTCCTTCTCCTTCACCTTCTAGGATTCCTTCTCATACTGAGGACCCCACCGAGGTTTTCAAGCGTAATGCCATTAACAAGCTTGTGGAGATGGTGCATAATGATGTTACTGGGCTGAGGAAGACTAGGGAAGCTGAAATGGAGGGTCTTTTTAGTTTACAAGCTGTGTTGAAGCAGAGGGAGGAGCAACTCAACAAGGGTTTGAAGGAAATGCATGAGGAGATGGAAGGTTTGGAGCAGCAGTTGCAGATGGTTTTGATGAATACTGATGTTTTGGAAGGTTGGTTGAGAGATAACCAAGGGAAGAAGAAGTTGGTCAGTTTGGAGGAGAATGTCGAGGATGCTTTTGAGTGTGTAGATGTGCTTTCAAAACAGATGCTTGAATCCACTGCTGCTGATTTGGCCATTGAGGACACTCTCTATGCATTGGATAAGGCTGTTCAGGTTGGGGCTATACCATTTGATCAGTACTTGAGGAGTGTGAGGGCACTGTCGAGGGACCAGTTCTTTCATAGAGCTACAACTGCAAAAGTTAGAGCTGCTCAGTTGCAGGCTCAGGTTGCTAATATGGCTGCTCGGATTCAACATTATGGTAGTAGCTGA 1212 0.4769 MVPPAVQSPNPQVTQQFLSSVLSQRGPSAVPYSEDTKWLIRQHLVALTTAFPSLEPKTATFTHNDGRSVNLLQADGTIPMTFQGVTYNIPVVIWLMESYPRHPPCAYVNPTRDMIIKRPHPHVNPSGLVSVPYLHNWIYPSSNLVDLVLSLSHLFGRDPPLYSQRRPNQNPNPNPNFQTLSSNIPNSSSGYPRTYPPSPYASASPSPSPSRIPSHTEDPTEVFKRNAINKLVEMVHNDVTGLRKTREAEMEGLFSLQAVLKQREEQLNKGLKEMHEEMEGLEQQLQMVLMNTDVLEGWLRDNQGKKKLVSLEENVEDAFECVDVLSKQMLESTAADLAIEDTLYALDKAVQVGAIPFDQYLRSVRALSRDQFFHRATTAKVRAAQLQAQVANMAARIQHYGSS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00348 403 Gene3D Ubiquitin Conjugating Enzyme 5 162 IPR016135 -
Rops3g00348 403 Gene3D - 324 384 - -
Rops3g00348 403 ProSiteProfiles Steadiness box (SB) domain profile. 323 391 IPR017916 -
Rops3g00348 403 ProSiteProfiles UEV domain profile. 21 165 IPR008883 GO:0015031|GO:0036211
Rops3g00348 403 MobiDBLite consensus disorder prediction 160 220 - -
Rops3g00348 403 Pfam UEV domain 41 161 IPR008883 GO:0015031|GO:0036211
Rops3g00348 403 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 10 390 - -
Rops3g00348 403 SUPERFAMILY UBC-like 24 161 IPR016135 -
Rops3g00348 403 MobiDBLite consensus disorder prediction 163 195 - -
Rops3g00348 403 Pfam Vps23 core domain 318 380 IPR017916 -
Rops3g00348 403 Coils Coil 261 291 - -
Rops3g00348 403 SUPERFAMILY Endosomal sorting complex assembly domain 323 383 IPR037202 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00348 K12183 - gmx:100798165 597.045