Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00331 ATGGGAGGCCAAGGTATTTTGAAAGGTGTCACAAAGCAAGTCAACCCTGGGAAAGCTACTATATTAGCTCTTGGCAAAGCTTTCCCTCATCAGCTTGTCATGCAAGAGTATTTAGTTGATGGATATTTCAGGGACACCAACTGTGACAATCCTGAGCTCAAGCAGAAGCTCTCTAGACTTTGCAAGACAACCACTGTGAAAACAAGGTACGTGGTTATGTCTGAGGAGATACTGAAAAAGTACCCAGAACTTGCGGTTGAAGGCATCCCCACTGTAAAGCAAAGGCTAGAGATATGTAACAAGGCAGTGACACAAATGGCCATTGAAGCTTCCCAAGTTTGCATCAAGAACTGGGGTAGATCTTTATCAGACATAACCCACGTGGTTTATGTCTCATCCAGTGAAGCTAGACTACCTGGTGGTGATCTTTACCTAGCCAAAGGACTGGGACTGAGCCCTGATACTCAAAGAATCATGCTCTATTTTGTGGGATGTTCTGGAGGTGTGGCTGGTCTTCGTGTTGCAAAAGACATAGCTGAGAACAACCCTGGAAGCCGAGTGCTGCCTGCTACTTCTGAAACTACCATTATTGGGTTCAAGCCACCAAGTGCTGATAGACCCTATGATCTAGTTGGGGTGGCACTCTTCGGGGACGGTGCTGGTGCTATGATAATTGGCTCAGACCCTATATTGGAAACTGAGAGGCCTCTCTTTGAGCTTCACACAGCAGTTCAGGAATTTTTGCCAGGCACCGAGAAGAAAATTGATGGGAAGCTGACAGAAGAGGGGATAAGCTTCAAGTTAGCAAGGGAACTTCCTCAAATAATTGAGGACAATGTAGAGGGATTCTGTAATAAATTAATGAGTGTGGTTGGGTTCAAGAACAAGGAGTATAATAAGCTGTTTTGGGCTGTTCATCCAGGGGGGCCTGCAATCTTGAACCGCATAGAGAAGAGACTTGATTTGTTGCCAGAGAAGCTGAATGCAAGTAGAAGAGCTCTCATGGATTATGGCAATGCTAGTAGCAATACCATTGTCTATGTGCTGGAGTATATGTTAGAAGAGGGGCTCAAGATTAGAAAGGAGGGTGGAGGAGATCCTGAATGGGGATTGATTCTTGCCTTTGGACCTGGGATTACTTTTGAGGGAATTCTAGCCAGGAACCTCTCTGCATGA 1176 0.4541 MGGQGILKGVTKQVNPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLSRLCKTTTVKTRYVVMSEEILKKYPELAVEGIPTVKQRLEICNKAVTQMAIEASQVCIKNWGRSLSDITHVVYVSSSEARLPGGDLYLAKGLGLSPDTQRIMLYFVGCSGGVAGLRVAKDIAENNPGSRVLPATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPILETERPLFELHTAVQEFLPGTEKKIDGKLTEEGISFKLARELPQIIEDNVEGFCNKLMSVVGFKNKEYNKLFWAVHPGGPAILNRIEKRLDLLPEKLNASRRALMDYGNASSNTIVYVLEYMLEEGLKIRKEGGGDPEWGLILAFGPGITFEGILARNLSA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00331 391 PIRSF PKS_III 8 391 IPR011141 GO:0009058|GO:0016747
Rops3g00331 391 SUPERFAMILY Thiolase-like 13 232 IPR016039 GO:0016746
Rops3g00331 391 SUPERFAMILY Thiolase-like 236 387 IPR016039 GO:0016746
Rops3g00331 391 Gene3D - 6 236 IPR016039 GO:0016746
Rops3g00331 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 12 389 IPR011141 GO:0009058|GO:0016747
Rops3g00331 391 FunFam Chalcone synthase 2 5 236 - -
Rops3g00331 391 FunFam Chalcone synthase 1 237 390 - -
Rops3g00331 391 CDD CHS_like 19 385 - -
Rops3g00331 391 Gene3D - 237 391 IPR016039 GO:0016746
Rops3g00331 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 389 IPR012328 -
Rops3g00331 391 Pfam Chalcone and stilbene synthases, N-terminal domain 11 229 IPR001099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00331 Rops-Chr3 4152810 4154243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00331 87 376 Miscellaneous Gene Families AT4G34250 25.857 3.46e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00331 - - vun:114168705 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00331 3 4152810 4154243 Rops3g00331 3 4152810 4154243 ECH