Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00327 ATGGAGTCCAAGAAGAGAAGTGGTGGAAACGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACGAGGAAGTTTTCAGCAACTTCGTGGACCATAAGTTTAAGGATTTGGATAGGGACAGAGATGGAAAGCTCTCTGTGAAGGAGCTTCAACCTGCTGTTGCTGATATCGGTGCTGCTCTTGGTTTACCTGCTCACGGCTCTAATCCTGATTCTGATCACATCTATTCTGAGGTGTTGAATGAATTCACACATGGGAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCTGACATTCTATTGGGCATGGCTGCTGGATTGAAGCGAGACCCAATTCTGATACTTCGCATTGATGGGGAAGATCTCCTCGAGTTCGTTAATGGTTCAAGTTATGAAGCAGAAATGGCTTCTATTTTCTCTCAGATTGAATCCCCTGAGAGGTCACTTCATGACCATATAATTGAAGCTCTGAGCAAACTCACTGTTGATCAAGGGATTCCTCCTGCATCAGATTCTTGGGTTTTGAGCAACATTGTGGAACCATCACTGCTATCTCAAGATGGGTCTGATTTGGATAAGCCTGTTTCTCAAGAGACATTTTTGGAGGAATTTAAGAAAGTGGCATTGAGTGTGGCTGATCGTCTTAAGGAGCAACCTGTCATAGTTGCTCACAGTGAAAACACCTTTGATGGAAGTGGCGTTAAGAGACTATTATCCAACAAGTTTGAATTAGACAAGACTTTGAACTCAGCTATGGAGACTTTGCCTAAAGACCGTAATGGAAAATTGTCAAAGGAGTATCTACGGGTGGCACTGGACGTGGTGGCTCCATCTTCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTGGTGAAGTCTTTAAGATGATGAATGCTGATGAAGCGAAGATGGTCAAAGAAGATGAGTTCAAGAAAATTTTAACTGAAATACTGGGGAGTATCATGTTACAGTTGGAGGGGAATCCCATATCAGTTTCTTCAAATTCGGTAGTGCACGAGCCACTAGACTCTTCTTCTACACTTCTGCAGCCAACCTCTGGTGAAACAGCATAG 1107 0.4309 MESKKRSGGNGQVLDGSNIMELVGNEEVFSNFVDHKFKDLDRDRDGKLSVKELQPAVADIGAALGLPAHGSNPDSDHIYSEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPILILRIDGEDLLEFVNGSSYEAEMASIFSQIESPERSLHDHIIEALSKLTVDQGIPPASDSWVLSNIVEPSLLSQDGSDLDKPVSQETFLEEFKKVALSVADRLKEQPVIVAHSENTFDGSGVKRLLSNKFELDKTLNSAMETLPKDRNGKLSKEYLRVALDVVAPSSGLPPVGAIEEMDKVIGEVFKMMNADEAKMVKEDEFKKILTEILGSIMLQLEGNPISVSSNSVVHEPLDSSSTLLQPTSGETA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00327 368 Gene3D - 13 114 - -
Rops3g00327 368 Gene3D - 132 340 - -
Rops3g00327 368 ProSitePatterns EF-hand calcium-binding domain. 41 53 IPR018247 -
Rops3g00327 368 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Rops3g00327 368 Pfam EF-hand domain pair 36 102 IPR002048 GO:0005509
Rops3g00327 368 ProSiteProfiles EF-hand calcium-binding domain profile. 28 63 IPR002048 GO:0005509
Rops3g00327 368 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 124 348 - -
Rops3g00327 368 SUPERFAMILY EF-hand 36 339 IPR011992 -
Rops3g00327 368 SMART efh_1 32 60 IPR002048 GO:0005509
Rops3g00327 368 SMART efh_1 300 328 IPR002048 GO:0005509
Rops3g00327 368 SMART efh_1 254 282 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00327 Rops-Chr3 4127601 4131414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00327 12 367 EF-hand Containing Proteins AT4G38810 69.444 2.71e-176 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00327 - - gmx:100820516 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00327 3 4127601 4131414 Rops3g00327 3 4127601 4131414 ECH