Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00320 ATGGAAGCTGTATTCGTAACCAAGCAACCAGCTTCTCATCTCAAAATCAAATTACTCCCTCCAAATACCAAACTTCCATTCCCTTCTTCCCGCCAACAGAAACTACCTCTTCGCCGCCACTTCCCCACCCTCTCCGCCACACTCCAAAACCAGCAACAACAGCAGCAACCTCCCACCCAAGAAGATGAGTCCTACGGCGAAGTCAAAGGAATCATCGGCAGCAGAGCCCTCGAAGGCGCCGTCGGAATGGAATACCTCATCGAATGGAAAGACGGCCACGCTCCTTCCTGGGTCCCCGCCGATTTCATAGCCAAAGACGTCCTCGCCGAATACGAAACTCCCTGGTGGACCGCCGCAAAAAAAGCTGATGAGTCCGCCCTCAAGAACCTCATCGACGGCAGCCGCGACGTCGACGCCGTGGACGCCGACGGCCGAACCGCGCTCCTCTTCGTCTCAGGCCTAGGCTCCGAGGCCTGCGTCCGAGTGCTGGCAGAAGCCGGCGCAAACCTCGACCACCGTGACAACAGCGGCGGACTCACGGCGCTGCACATGGCGGCGGGGTACGTAAGGCCCGGCGTGGCGAAGATTCTTCTAGAACTTGGAGCGGATCCAGAGGTAACAGACGATAGTGGAAGAACGCCGTTGGATCTGGCGAGGGAGATTCTGAAGGCAACTCCGAAGGGGAATCCGATGCAATTTGGGCCTAGGGTTGGATTAGAAGGTGTGATTAGGGTTTTGGAAGGTGCGGTTTTCGAGTATGCTGAGGTTGAGGAGATTATAGAACGGAGGGGGAAGGGTGAGAATTTGGAGTATTTGGTGCGGTGGAAGGATGGTGGTGCTAATGAGTGGGTGAAGGCGAAGTATGTGGCGGAGGATTTGGTGAGGGACTATGAGGCTGGCCTTGAGTACGCGGTGGCTGAAGCGGTGGTTGGGAGGAGGGTTGGGGATGAAGGGAAGCCTGAGTTTCTGGTTAAATGGGCTGATTTGGATGAGCCCACTTGGGAGCCTGAGGAGAATGTGGATCCTGAGCTTGTTAAGTTGTTTGAACTAAGTAACAATCAACCCCAGCCCAGTAGTAGTGATAATGGGCCTTCCATCCTTGTTTCCAATCAGGATGGCCCATGA 1125 0.5529 MEAVFVTKQPASHLKIKLLPPNTKLPFPSSRQQKLPLRRHFPTLSATLQNQQQQQQPPTQEDESYGEVKGIIGSRALEGAVGMEYLIEWKDGHAPSWVPADFIAKDVLAEYETPWWTAAKKADESALKNLIDGSRDVDAVDADGRTALLFVSGLGSEACVRVLAEAGANLDHRDNSGGLTALHMAAGYVRPGVAKILLELGADPEVTDDSGRTPLDLAREILKATPKGNPMQFGPRVGLEGVIRVLEGAVFEYAEVEEIIERRGKGENLEYLVRWKDGGANEWVKAKYVAEDLVRDYEAGLEYAVAEAVVGRRVGDEGKPEFLVKWADLDEPTWEPEENVDPELVKLFELSNNQPQPSSSDNGPSILVSNQDGP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00320 374 MobiDBLite consensus disorder prediction 349 374 - -
Rops3g00320 374 MobiDBLite consensus disorder prediction 47 62 - -
Rops3g00320 374 SUPERFAMILY Chromo domain-like 302 353 IPR016197 -
Rops3g00320 374 CDD CD3_cpSRP43_like 301 350 IPR030300 -
Rops3g00320 374 SUPERFAMILY Chromo domain-like 252 300 IPR016197 -
Rops3g00320 374 ProSiteProfiles Chromo and chromo shadow domain profile. 304 340 IPR000953 -
Rops3g00320 374 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Rops3g00320 374 ProSiteProfiles Ankyrin repeat region circular profile. 143 175 - -
Rops3g00320 374 Pfam Chromo (CHRromatin Organisation MOdifier) domain 306 349 IPR023780 -
Rops3g00320 374 SMART chromo_7 252 302 IPR000953 -
Rops3g00320 374 SMART chromo_7 303 353 IPR000953 -
Rops3g00320 374 SMART chromo_7 64 116 IPR000953 -
Rops3g00320 374 Pfam Ankyrin repeats (many copies) 163 218 IPR002110 GO:0005515
Rops3g00320 374 SUPERFAMILY Ankyrin repeat 110 220 IPR036770 -
Rops3g00320 374 Gene3D - 110 249 IPR036770 -
Rops3g00320 374 PANTHER MYOTROPHIN 46 235 - -
Rops3g00320 374 CDD CD2_cpSRP43_like 252 299 - -
Rops3g00320 374 MobiDBLite consensus disorder prediction 47 66 - -
Rops3g00320 374 ProSiteProfiles Ankyrin repeat region circular profile. 177 209 - -
Rops3g00320 374 Gene3D - 300 351 - -
Rops3g00320 374 ProSiteProfiles Ankyrin repeat profile. 143 175 IPR002110 GO:0005515
Rops3g00320 374 SUPERFAMILY Chromo domain-like 61 115 IPR016197 -
Rops3g00320 374 SMART ANK_2a 177 206 IPR002110 GO:0005515
Rops3g00320 374 SMART ANK_2a 110 139 IPR002110 GO:0005515
Rops3g00320 374 SMART ANK_2a 143 172 IPR002110 GO:0005515
Rops3g00320 374 Gene3D - 62 109 - -
Rops3g00320 374 Gene3D - 250 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00320 Rops-Chr3 4082622 4084043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00320 119 218 Acyl Lipid Metabolism Gene Families AT5G53470 31.000 2.08e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00320 K12271 - gmx:100818382 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00320 3 4082622 4084043 Rops3g00320 3 4082622 4084043 ECH