Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00310 ATGAATAGGATCCTCCGATCCACTCTCAGAACCAAGACTGCTTCATCGTTAGCATATGCTGCGGTTTCCAGAAGTTTCCAGGAAAATCTCCTTCAGGTTCCCTTATGGTCTAGATCGATTAGTGCAGAATCTTCCTTGGCAAAGGATAATTCAACTACTGATGTGAAAAATGGTGAAGGGTTCAAGGGTCATGATATGCTTGCCCCTTTCACAGCTGGGTGGCAAACTACTGATTTGAATCCTTTGATTATCGAAAAGTCAGAGGGAAGCTATGTATATGACATTAACGGGAGGAAATATCTTGATGCACTTGCTGGCCTATGGTCCACTGCTTTAGGGGGCAATGAGCCGCGCCTTGTTGACGCTGCCATTACACAATTAAAGAAGTTGCCGTTTTACCATTCCTTTTGGAATCGGACCACAAGACCTTCTTTGGATCTAGCCAAGGAACTCCTAGATATTTTTACAGCCAGAAAAATGGCTAAAGCTTTTTTTGTTAACAGTGGATCGGAAGCCAATGACTCTCAGGTGAAACTTGTATGGTATTATAACAATGCACTTGGAAGACCGAATAAGAAGAAATTCATAGCTCGTGCCAAATCGTATCATGGTTCTACTTTGATATCGGCCAGTCTTTCCGGCCTTCCAGCTTTACATCAAAAATTTGATCTGCCAGCTCCTTTTGTCTTGCACACTGACTGTCCACATTACTGGCGGTATCATCTTCCAGGCGAGACAGAGGAAGAGTTTTCGACCAGATTGGCCAACAATTTGGAGGAGCTAATTCTGAAAGAAGGACCAGACACTATTGCTGCATTTATTGCAGAACCAGTGATGGGGGCAGGAGGTGTACTACTTCCACCAGCAACTTATTTTGAAAAGATCCAAGCCGTTGTTAAGAAGTATGACATTCTTTTCATAGCAGATGAGGTGATCTGTGCCTTTGGAAGGCTCGGGTCAATGTTTGGATGTGACAAGTACGGCATTAAGCCAGACCTTGTTTCCTTGGCAAAGGCACTTTCTTCTGCATATTTGCCAATTGGAGCTGTCCTTGTGAGCCCAGAAGTTTCAGAAGTTATACACTCACAAAGCAACAAACTTGGTAATTTTTCCCATGGGTTTACTTATTCTGGACACCCGGTGCCCTGTGCTGTTGCACTTGAAGCAGTCAAGATCTACAGAGAAAGAAATATTGTTGACATGGTGAACAAGATCTCCCCTAGGTTCCAAGATGGCTTAAAAGCTTTTTCTGACAGTCCCATCATTGGAGAGATACGGGGAACTGGCTTGATTCTGGGGACTGAGTTCACAGACAACAAATCACCTAATGATCCATTTCCTCCTGAATGGGGAGTAGGTGCCTATTTTGGAGCACAATGTGAGAAGCATGGGATGTTAGTTCGTGTAGCTGGAGATAATATCATGATGTCTCCACCATTTATTATCTCCCCAGCAGAAGTTGATGAGTTAATCAGAATTTATGGAATAGCTTTAAAAGAGACGGAAAAGAAAGTACAAGAGCTCAAGTCTCAGCGCAAGTAG 1542 0.4332 MNRILRSTLRTKTASSLAYAAVSRSFQENLLQVPLWSRSISAESSLAKDNSTTDVKNGEGFKGHDMLAPFTAGWQTTDLNPLIIEKSEGSYVYDINGRKYLDALAGLWSTALGGNEPRLVDAAITQLKKLPFYHSFWNRTTRPSLDLAKELLDIFTARKMAKAFFVNSGSEANDSQVKLVWYYNNALGRPNKKKFIARAKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANNLEELILKEGPDTIAAFIAEPVMGAGGVLLPPATYFEKIQAVVKKYDILFIADEVICAFGRLGSMFGCDKYGIKPDLVSLAKALSSAYLPIGAVLVSPEVSEVIHSQSNKLGNFSHGFTYSGHPVPCAVALEAVKIYRERNIVDMVNKISPRFQDGLKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIMMSPPFIISPAEVDELIRIYGIALKETEKKVQELKSQRK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00310 513 Gene3D Aspartate Aminotransferase, domain 1 82 497 IPR015422 GO:0003824
Rops3g00310 513 Coils Coil 491 511 - -
Rops3g00310 513 CDD OAT_like 76 498 IPR005814 GO:0008483|GO:0030170
Rops3g00310 513 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 306 343 IPR005814 GO:0008483|GO:0030170
Rops3g00310 513 SUPERFAMILY PLP-dependent transferases 67 499 IPR015424 -
Rops3g00310 513 Gene3D - 116 398 IPR015421 GO:0003824
Rops3g00310 513 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 50 500 - -
Rops3g00310 513 Pfam Aminotransferase class-III 81 493 IPR005814 GO:0008483|GO:0030170
Rops3g00310 513 FunFam Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, probable 116 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00310 Rops-Chr3 3817287 3832894 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00310 K16871 - gmx:100792355 941.414