Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00304 ATGGCTACCAATACCATTCATGGGAACACTGAAACTGCTCAACCCAACATTGCTCCAGCAAAGCAGCCTCTCCCCACTGCTAAGACCGTTGATTCTCAATCTGTACTCAGAAGGCTTCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGTATATCTGCATTTCCTGAAGAGGACAACATATTCATTTGGAAAGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACTGAGTATAAGTTATCCCTTTCATTTCCCAATGATTACCCTTTCAAGCCTCCTAAAGTCAAGTTTGAAACAGCTTGCTTCCATCCCAATGTGGATCTGCATGGCAATATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCCTATGATGTCAGAACAATTCTACTATCCATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCTCCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGACAGTGGAGAAGTTGTACAAAGCTCCAAGTGGTACTAAGCCTTGA 549 0.4208 MATNTIHGNTETAQPNIAPAKQPLPTAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFIWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETACFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKTVEKLYKAPSGTKP* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00304 182 Gene3D Ubiquitin Conjugating Enzyme 27 178 IPR016135 -
Rops3g00304 182 CDD UBCc 37 174 IPR000608 -
Rops3g00304 182 MobiDBLite consensus disorder prediction 1 31 - -
Rops3g00304 182 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 107 122 IPR023313 -
Rops3g00304 182 SMART ubc_7 37 179 - -
Rops3g00304 182 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 34 179 IPR000608 -
Rops3g00304 182 Pfam Ubiquitin-conjugating enzyme 38 172 IPR000608 -
Rops3g00304 182 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 172 - -
Rops3g00304 182 SUPERFAMILY UBC-like 31 174 IPR016135 -
Rops3g00304 182 MobiDBLite consensus disorder prediction 1 19 - -
Rops3g00304 182 FunFam ubiquitin-conjugating enzyme E2 20 28 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00304 Rops-Chr3 3717175 3718615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00304 36 143 Miscellaneous Gene Families AT3G17000 32.743 5.56e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00304 K06688 - gmx:100305664 324.324