Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00279 ATGGAGGAAGTTAGCGAAGGCAAAGACTTCGTGTTCCCAAAACAAGAAGAGAACATTCTAGAATTCTGGTCCAAAATCAACGCATTCCACACTCAATTATCTCTCACCAAAGACAAACCCGAATACATCTTCTACGATGGCCCTCCCTTCGCCACTGGTCTCCCTCACTACGGCCACATCCTCGCCGGAACCATTAAAGACATCGTCACTCGCTACCATTCCATGACCGGCCACCACGTCACTCGCCGATTCGGTTGGGACTGTCACGGCCTCCCCGTTGAAAACGAGATCGACAAGAAGCTAGGTATTAAGAAGCGTGAGGATGTTCTCAAAATGGGAATCGCTGCTTACAATGAAGAGTGTAGGAGTATCGTCACGCGCTATGTTAGCGAGTGGGAAACCATCATCACTCGTACCGGAAGGTGGATCGATTTCAAAAATGATTATAAGACTATGGACCTTAAGTTCATGGAGTCAGTTTGGTGGGTTTTTGCTCAGCTTTTTGAGAAAAACCTTGTTTATAAAGGTTTTAAGGTCATGCCTTATAGCACCGGCTGCAAGACTCCACTCTCTAATTTTGAGGCTGGTCAGAATTATAAGGATGTGTCTGATCCTGAAGTGTTTATGACATTTCCAATCTTGGGCGACCCACATGGTGCATCTTTTGTGGCTTGGACAACAACTCCATGGACTCTTCCTAGTAATCTTGCACTCTGTGTCAATGCTAATTTTACCTATGTGAAGGTACGCAATAAGTATTCGGGTAAAGTTTATGTTGTTGCTGAATCTCGTCTGTCTGCAATTCATAACCCTAAAGACAAACCCAAAGAGGCTGTTGCTAATAGTTCCAAAGACGTCCCTAAAAATACAAATGCAAAGAACAAGGGATCTTCAGGTGGAAAGACGGAAAATGTGTTGGATTCTTTTGAAGTGCTGGATAAAGTCTCAGGGGCTTCATTAGTGGGGATGAAGTATGAACCATTGTTTGATTACTTTTTAGAGTTATCTGATACGGCTTTTAGAGTTGTTTCCGACAATTATGTTACGGATGATAGTGGTACCGGCGTCGTCCACTGTGCCCCTGCTTTTGGTGAAGACGATTTCCGTGTTTGCATTGAAAATCAAATTCTTGCCAAGGATAATCTAACTGTAGCTGTTGATGATGATGGCTGCTTTACTGAAAAAATTACTGACTTTAGTGGGCGGTATATCAAAGATGCTGACAAGGATATCATTGAAGCAGTGAAGGCAAAGGGTAGGCTGGTTAGGTCTGGAGCTTTTACACATTCTTATCCATACTGCTGGAGATCACAGACTCCTCTCATTTACAGAGCTGTTCCCAGCTGGTTTGTTAGAGTGGAGAAGTTGAAAGATAAATTGTTGGAAAACAATAAGCAGACTTACTGGGTTCCTGATTTTGTCAAGGATAAGCGATTTCACAATTGGCTGGAAAATGCAAGAGATTGGGCAATTAGTCGTAGTAGATTTTGGGGGACCCCTCTCCCTATTTGGATTAGTGAGGATGAGCAAGAGATAGTTGTTATAGATTCTGTTGCAAAACTTGAAAAGCTTTCAGGTGCAAAGGTGTCTGACCTTCATCGGCACAACATTGATCATATTACAATTCAAACTGAAAGCGGCCACGTGCTTAGACGTGTTGATGATGTGTTTGACTGCTGGTTTGAGAGTGGATCCATGCCTTATGCGTATCTCCATTATCCTTTTGAAAATGCTGAGCTGTTTGAAAAGAATTTTCCTGGCCATTTTGTTGCTGAAGGGCTGGATCAAACCCGTGGTTGGTTTTATACACTAATGGTGCTGTCTACTGCATTATTTGGTAAGCCTGCCTTTAGGAATCTAATTTGCAATGGGCTTGTCCTGGCTGAAGATGGGAAAAAAATGAGTAAAAGCTTAAAAAATTATCCTTCACCAATGGAAGTTATTGGTGATTATGGAGCGGATGCCTTGCGATTATACCTTATAAACTCTCCTGTTGTGCGTGCTGAGCCACTTCGTTTCAAGAAGGAAGGAGTTTATGGTGTTGTTAGGGATGTTTTCCTTCCCTGGTATAATGCATATAGGTTCCTTGTTCAAAATGCAAAGAGGCTTGAAGTTGAGGGTCTAGCACCTTTTGTCCCCTTTGATCAGGCTACACTTCAGAAGTCATTGAATGTTCTTGATCAGTGGATCAACTCAGCCACGCAAAGCCTTGTTCATTTTGTCCGACAAGAAATGAATGGTTACCGCCTTTATACGGTGGTTCCTTATCTTCTAAAGTTTCTTGATAACCTTACAAATATATATGTACGGTTCAACCGTAAGAGACTTAAAGGTCGTACTGGAGAAGAAGACTGCAGGACAGCACTCTCAACTCTTTACAATGTTCTTTTGTTATCCTGTAAAGTGATGGCTCCTTTTACACCTTTTTTCACCGAGGTCCTCTATCAAAATATGCGAAAAGTTTATAATGGATCAGAGGAGAGCATACACTATTGTAGTTTTCCTGAGGAAGAAGGCAAGAGGGGAGATCGAATTGAGCAAAGTGTTTCAAGGATGACGACAATAATTGATCTGGCCCGAAACATTCGTGAGCGTCATAACAAGCCTCTTAAGACTCCACTCAGGGAGATGGTGATTGTGCATCCTGACACAGACTTCCTTGATGACATAAATGGAAAGTTGAGGGAGTATGTGCTGGAGGAACTCAACATACGATCCCTTGTTCCATGTAATGATACGTTGAAGTATGCATCTTTACGTGCCGAGCCTGATTTTAGCGTTTTAGGTAAGAGACTAGGAAAATCAATGGGCATTGTTGCCAAAGAAATCAAAGCAATGTCACAGGAAAAAATTTTGGCTTTTGAGAATGCTGGAGAAGTTGTCATTGCAAATCACTCATTGAAGCTGTCTGATATTAAGGTTCTCCGTGATTTTAAACGACCTGATGGTATGACTGAGAAGGAGGTTGATGCTGCTGGAGATGGTGATGTTTTAGTGATAATGGATTTACGTCCTGATGAATCATTGTTTGAGGCTGGTGCTGCTCGAGAGATTGTCAACAGAATTCAGAAGTTAAGAAAGAAAGTTGCTCTTGAACCGACTGACATAGTGGAGGTTTACTTTGAATCAATGGATGAAGATAAATCAATCTCTCAGAGAGTTTTGCATTCACAGGAATCCTATATCAGAGATGCTATTGGTACTCAGTTGCTTCCATATTCTCTGATGCCTGCACATGCAGTTGTCCTTGGTGAAGAGAGGTTCCATGGGATTTCTAACATGTCGTTTGGTATCACTTTGGCAAGACCCGCTTTGATGTTCAACACAAAAGCTATTATTTCACTGTTTACAGGTGACGAAAAATTTGCACATAATTTGCAAACTTACCTGCTATCTAGAGATCATTCTAATTTGAAGTCCGAGTTTCAAGATGGAAATGGAAAGAAAATTGTAGACTCAATTGAAAAGCAACCTGCTGCGGAAGTGGTTCTCGTTGATATGCCATGTGGTTGCAAGATTAGGAACACAGAATATAGCAGGCCTGCCTAG 3549 0.4184 MEEVSEGKDFVFPKQEENILEFWSKINAFHTQLSLTKDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYHSMTGHHVTRRFGWDCHGLPVENEIDKKLGIKKREDVLKMGIAAYNEECRSIVTRYVSEWETIITRTGRWIDFKNDYKTMDLKFMESVWWVFAQLFEKNLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVFMTFPILGDPHGASFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYSGKVYVVAESRLSAIHNPKDKPKEAVANSSKDVPKNTNAKNKGSSGGKTENVLDSFEVLDKVSGASLVGMKYEPLFDYFLELSDTAFRVVSDNYVTDDSGTGVVHCAPAFGEDDFRVCIENQILAKDNLTVAVDDDGCFTEKITDFSGRYIKDADKDIIEAVKAKGRLVRSGAFTHSYPYCWRSQTPLIYRAVPSWFVRVEKLKDKLLENNKQTYWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPIWISEDEQEIVVIDSVAKLEKLSGAKVSDLHRHNIDHITIQTESGHVLRRVDDVFDCWFESGSMPYAYLHYPFENAELFEKNFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMEVIGDYGADALRLYLINSPVVRAEPLRFKKEGVYGVVRDVFLPWYNAYRFLVQNAKRLEVEGLAPFVPFDQATLQKSLNVLDQWINSATQSLVHFVRQEMNGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLLSCKVMAPFTPFFTEVLYQNMRKVYNGSEESIHYCSFPEEEGKRGDRIEQSVSRMTTIIDLARNIRERHNKPLKTPLREMVIVHPDTDFLDDINGKLREYVLEELNIRSLVPCNDTLKYASLRAEPDFSVLGKRLGKSMGIVAKEIKAMSQEKILAFENAGEVVIANHSLKLSDIKVLRDFKRPDGMTEKEVDAAGDGDVLVIMDLRPDESLFEAGAAREIVNRIQKLRKKVALEPTDIVEVYFESMDEDKSISQRVLHSQESYIRDAIGTQLLPYSLMPAHAVVLGEERFHGISNMSFGITLARPALMFNTKAIISLFTGDEKFAHNLQTYLLSRDHSNLKSEFQDGNGKKIVDSIEKQPAAEVVLVDMPCGCKIRNTEYSRPA* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00279 1182 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops3g00279 1182 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 688 936 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops3g00279 1182 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 431 IPR009008 GO:0002161|GO:0006418
Rops3g00279 1182 SUPERFAMILY Nucleotidylyl transferase 12 683 - -
Rops3g00279 1182 Gene3D HUPs 390 670 IPR014729 -
Rops3g00279 1182 Gene3D HUPs 4 209 IPR014729 -
Rops3g00279 1182 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1098 IPR023586 GO:0004822
Rops3g00279 1182 Gene3D - 675 867 - -
Rops3g00279 1182 CDD IleRS_core 440 673 - -
Rops3g00279 1182 Pfam Anticodon-binding domain of tRNA ligase 727 876 IPR013155 GO:0004812|GO:0006418
Rops3g00279 1182 MobiDBLite consensus disorder prediction 271 301 - -
Rops3g00279 1182 FunFam Isoleucine--tRNA ligase cytoplasmic 396 671 - -
Rops3g00279 1182 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Rops3g00279 1182 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Rops3g00279 1182 PRINTS Isoleucyl-tRNA synthetase signature 552 565 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Rops3g00279 1182 PRINTS Isoleucyl-tRNA synthetase signature 592 601 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Rops3g00279 1182 MobiDBLite consensus disorder prediction 283 301 - -
Rops3g00279 1182 CDD Anticodon_Ia_Ile_ABEc 673 860 IPR033709 GO:0000049
Rops3g00279 1182 Pfam Domain of unknown function (DUF5915) 896 1063 - -
Rops3g00279 1182 Pfam tRNA synthetases class I (I, L, M and V) 308 669 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops3g00279 1182 Pfam tRNA synthetases class I (I, L, M and V) 19 272 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops3g00279 1182 Hamap Isoleucine--tRNA ligase [ileS]. 2 1095 IPR023586 GO:0004822
Rops3g00279 1182 FunFam Isoleucine--tRNA ligase cytoplasmic 675 867 - -
Rops3g00279 1182 FunFam Isoleucyl-tRNA synthetase,cytoplasmic 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00279 Rops-Chr3 3447358 3462358 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00279 K01870 - gmx:100791830 2175.59