Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00278 ATGTTTTTGATGAGACCCATTTTCCGAACACAGCCAAGACCATCTCTTTCGGTGTTGCTTTCTTCCCATGGATATTGCAATTCCTCTTCCACTTCCTCAGCAGCTGCAATTCAAGCTGAGAGGACCATCAAACATGGTCCCAGAAACGATTGGACCCGAGAGGAAGTCAAATCCATCTATGACTCTCCAATTCTCGATCTTCTATTTCATGGGGCTCAAGTTCACAGACATGCTCATAGCTTCAGGGAAGTGCAGCAGTGTACTCTTCTCTCTGTTAAAACAGGAGGGTGCAGTGAAGATTGTTCCTATTGTCCTCAATCTTCCAGGTATGATACAGGACTCAAAGGGCAACGACTCATGAACAAGGAGGCTGTTCTCGAGGCTGCAAAGAAGGCAAAAGAGGCTGGGAGCACTCGCTTTTGTATGGGTGCTGCATGGAGGGACACAGTAGGGAGAAAGACCAACTTCAACCAGATCCTTGAATATGTAAAAGACATAAGGGATATGGGGATGGAGGTGTGTTGCACCCTTGGCATGCTGGAGAAACAGCAGGCTGTTGAACTCAAGAAGGCAGGTCTCACTGCCTATAATCACAATCTTGATACTTCAAGGGAATACTATCCAAATATCATCACCACAAGGACTTATGATGAGCGCCTAAAAACCCTTGAGTTTGTTCGTGATGCGGGGATTAATGTTTGTTCTGGAGGAATTATAGGGCTCGGAGAAGCAGAGGAGGACCGTGTAGGATTGTTACATACATTGTCAACACTTCCCACCCATCCAGAGAGTGTTCCTATTAATGCACTTGTTGCTGTTAAGGGAACCCCTCTTCAGGATCAGAAGCCTGTTGAAATATGGGAGATGATTCGCATGATAGGCACAGCACGTATCGTAATGCCAAAAGCAATGGTCAGGTTATCAGCTGGCAGAGTTAGGTTCTCCATGCCAGAGCAGGCCTTGTGCTTTCTTGCTGGTGCAAATTCTATCTTCACTGGTGATAGGCTTCTCACTACTCCTAACAATGATTTTGATGCTGATCAACTCATGTTTAAAGTTCTTGGACTCCTCCCAAAAGCTCCAAGCTTACATGAAGTAGAAACTAGTGAGGCTGAGGATTATAACCAAGCTGCTTCTTCTAGTTGA 1146 0.4546 MFLMRPIFRTQPRPSLSVLLSSHGYCNSSSTSSAAAIQAERTIKHGPRNDWTREEVKSIYDSPILDLLFHGAQVHRHAHSFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQRLMNKEAVLEAAKKAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGDRLLTTPNNDFDADQLMFKVLGLLPKAPSLHEVETSEAEDYNQAASSS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00278 381 PIRSF Biotin_synth 31 365 IPR024177 -
Rops3g00278 381 NCBIfam biotin synthase BioB 50 356 IPR002684 GO:0004076|GO:0009102
Rops3g00278 381 Gene3D Aldolase class I 48 360 IPR013785 -
Rops3g00278 381 SMART BATS_2 266 358 IPR010722 -
Rops3g00278 381 Pfam Biotin and Thiamin Synthesis associated domain 266 356 IPR010722 -
Rops3g00278 381 PANTHER BIOTIN SYNTHASE 29 379 IPR002684 GO:0004076|GO:0009102
Rops3g00278 381 ProSiteProfiles Radical SAM core domain profile. 82 311 IPR007197 GO:0003824|GO:0051536
Rops3g00278 381 SFLD biotin synthase 44 363 IPR024177 -
Rops3g00278 381 SMART MiaB 87 295 IPR006638 GO:0003824|GO:0051536
Rops3g00278 381 CDD Radical_SAM 94 293 - -
Rops3g00278 381 Pfam Radical SAM superfamily 93 252 IPR007197 GO:0003824|GO:0051536
Rops3g00278 381 SFLD BATS domain containing 44 363 - -
Rops3g00278 381 Hamap Biotin synthase [bioB]. 49 359 IPR002684 GO:0004076|GO:0009102
Rops3g00278 381 FunFam Biotin synthase 48 361 - -
Rops3g00278 381 SUPERFAMILY Radical SAM enzymes 49 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00278 Rops-Chr3 3435345 3438756 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00278 K01012 - gmx:100808225 675.626