Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00271 ATGGCTTCTGTTCTGCCACTACCCCACAACCTCAAATATCCCACCATTCCATCTCTTTCCCAGCGGCTCTTCCTTCCCAACATCCACCTTCAACTCTTCCTTAATCCCATCAAACTTTCACCGATATTCCTCCACACACCCATCAAATGCTCTTCCACTTCCATCATCTCAAGCTTAACCCCCGAGTTGGACTTGGAAGAATCATCACCAGGGCCTCCACTGAGTGAATTATGGAAGGAAATCCAAGGTTCCAACGACTGGGAAGGTCTTCTAGATCCCATAAATCCCCTCCTACGCCAAGAAATCATTCGCTACGGTGAACTCGCTCAAGCCTGCTACGATTCCTTCGACTTCGACCCTCACTCCAAGTACTGTGGAACCTGCAAATACCACCCAGCACATTTCTTCGACAATCTCGACATGTCAGACACAGGCTACACCATAAGCCGCTACCTCTACGCAACCTCAAACATCAACCTCCCCAAATTGTTCCAGAAATCCAAACTCACCAGCGCGTGGAGCCCACATGCAAACTGGATGGGTTACGTGGCAGTTTCAACCGATGAGGAACAGATCAAACGTTTGGGACGCCGTGACATAGTTATCGCTTGGAGAGGCACAGTCACGTGCATCGAATGGATTTATGACCTCAAAGATATTCTCTGCCCTGCTAACTTCACAAACGACCCAACCATCAAAGTTGAATCAGGGTTCTACGATCTCTACACTAAGAAAGAAGATTCATGCAGCTATTGCTCTTTCTCAGCCCGTGAACAAATACTTTCAGAGGTGAAGAGGCTTCTTCAGTACTACGAAGAAGAAGAGATTAGTATCACGATCACGGGGCATAGTCTCGGTGCTGCTTTAGCCATACTCAGTGCTTATGACATAGCTGAATTGAAGTTAAACATTGTTCAAGATGGTGATCTCGTAACCAAGATCCCTGTCACGGTGTACTCTTTTGCTGGTCCTAGAGTTGGGAATTTGAAGTTTAAGGAAAGGTGTGAGGAGCTTGGAGTTAAGGTTTTGAGGGTAGTAAACGTGCATGATATGGTACCGAGCGTGCCTGGGATAATAACCAATGAGAAGTTTCAGTTTCAAAAGTATATAGAGGATGCTTTATCTTTTCCTTGGAGTTATGCACATGTTGGGAAAGAACTTGCGTTGGACCACTCGCATAGTCCTTTTTTGAAGGGACATAATGATCTTATGTGTGCACATAACTTGGAGGTTCATTTGCATTTAATGGATGGGTACCATGGGAAGGAGAAAGAGTTTCAATTGGCATCAAAAAGGGACATAGCTCTTGTGAATAAGAGCTGTGATTTTCTCAGGAGTGAGTATGGAGTGCCACCACATTGGAGGCAGGATGAGAACAAGGGAATGGTGAGAAGCAGAGATGGAAGGTGGATTTTGCCAGAACGACCCACAATGGAGGCTCATCCACCAGATACTGCACACCATCTTCAGCAAGTGCTCAACAACCACCTCACTGCTCACCAATTAGGAACCACATAA 1518 0.4592 MASVLPLPHNLKYPTIPSLSQRLFLPNIHLQLFLNPIKLSPIFLHTPIKCSSTSIISSLTPELDLEESSPGPPLSELWKEIQGSNDWEGLLDPINPLLRQEIIRYGELAQACYDSFDFDPHSKYCGTCKYHPAHFFDNLDMSDTGYTISRYLYATSNINLPKLFQKSKLTSAWSPHANWMGYVAVSTDEEQIKRLGRRDIVIAWRGTVTCIEWIYDLKDILCPANFTNDPTIKVESGFYDLYTKKEDSCSYCSFSAREQILSEVKRLLQYYEEEEISITITGHSLGAALAILSAYDIAELKLNIVQDGDLVTKIPVTVYSFAGPRVGNLKFKERCEELGVKVLRVVNVHDMVPSVPGIITNEKFQFQKYIEDALSFPWSYAHVGKELALDHSHSPFLKGHNDLMCAHNLEVHLHLMDGYHGKEKEFQLASKRDIALVNKSCDFLRSEYGVPPHWRQDENKGMVRSRDGRWILPERPTMEAHPPDTAHHLQQVLNNHLTAHQLGTT* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00271 505 SUPERFAMILY alpha/beta-Hydrolases 95 420 IPR029058 -
Rops3g00271 505 Pfam Lipase (class 3) 201 358 IPR002921 GO:0006629
Rops3g00271 505 Gene3D alpha/beta hydrolase 77 484 IPR029058 -
Rops3g00271 505 CDD Lipase_3 141 393 - -
Rops3g00271 505 FunFam Phospholipase A1-II 3 77 482 - -
Rops3g00271 505 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 67 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00271 Rops-Chr3 3309685 3311386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00271 74 493 Acyl Lipid Metabolism Gene Families AT1G51440 73.953 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00271 - - gmx:100795661 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00271 3 3309685 3311386 Rops3g00271 3 3309685 3311386 ECH