Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00259 ATGACGACGTCGTTCGGAGCAGCAACGCTCAGTGACCCTAAGGTTCAGATCCCAAGCTTTCATGGCTTGAGGTCTGCATCCGCATCCGCATCTGCTCTCACTCGCAGTGCCCTCTCCATTCCTTCATCCTCTCCCACCCTCTCTCTCATACGCGCTGTCTCCACGCCTGCAAAATCTGAAACTGTTACTGAGAAGCGTAGCAAAGTTGAAATATTCAAAGAACAAAGCAATTTCATTAGATATCCTCTTAACGAGGATTTGTTGACGGATGCTCCTAATTTAAGTGAACCTAGCACACAAATGATCAAGTTTCATGGTAGCTATCAACAGTATAATAGAGATGAGCGTGGTTCAAGAACCTACTCCTTTATGATACGTACTAAGAACCCTTGTGGGAAAGTTTCAAACCAACTTTACTTGACAATGGATGATCTTGCTGACCAGTTTGGAATTGGGACACTTCGTTTGACTACCAGACAAACGTTTCAGCTCCATGGTGTTATCAAGAAGGACCTTAAAACAGTGATGAGCACCATTATCAGAAATATGGGTTCAAGTCTTGGTGCATGTGGTGACCTAAACAGAAATGTACTTGCTCCGGCTGCTTCCTTTGTGAGAAAAGATTACCTCTTTGCTCAAAAAACTGCGGAAAACATCGCTGACCTCCTGGCTCCTCAGTCTGGTTTCTACTATGATATTTGGGTAGATGGGGAAAGGATTATGTCATCGGAATCACCAGAAGTAATTCAGGCACGAAATGACAATTCTCATGGCACAAACTTCCCAGATTCACCTGAGCCCATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAATTGCAGTTACTGTGCCAACTGATAACTCAGTGGATATTCTCACCAATGATATTGGTGTTGTTGTTGTTACTGATGATTATGGAGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACACATAGGTTGGAATCCACTTTTCCCCGCTTGGCTGAACCATTGGGTTATGTACCAAAAGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTGCACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCTTGGGGAATTGAAAAATTCAGAAGTGTAGTTGAGCAATATTATGGCAGGAAATTTGAACCTTTCCGTGCCCTACCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATCAGCAGGGTGATGGCAGTTTATTTTATGGGCTTCATGTTGATAATGGTCGTATTGCTGGAAAAATGAAAAAGACACTGAGGGAGGTTATTGAGAAGTATAAGTTGGATGTTCGGATCACTCCAAATCAGAACATCATATTGACTGGTATTCGTGCTGCATGGAAGCGTCCCATCACAACCGCTCTTGCTCAAGTTGGTCTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACGGCAATGGCATGCCCAGCTTTCCCTTTATGTCCACTGGCAATCACTGAAGCTGAACGTGGGATACCAAACATTCTTAAGCGGATTCGCGCTGTTTTTGAGAAGGTTGGTCTGAAGTATAACGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGCTGTGCTAGACCATACATGGCCGAACTTGGACTGGTCGGTGATGGCCCAAATAGCTACCAGATTTGGCTTGGAGGAAACCAGAGTCAAACGTCATTAGCTCGAAGTTTCATGGACAAGGTGAAGCTTCAAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAACCAGGAAGGGATTTGAGAAACTTAAAGAATATGTTGAGAAATGGGAGGGTCCAGTGGTAGCACCAGCACGCTACAACCTCAAGCTTTTTGCCGACAAGGAGACATACGAAGCAATGGATGGACTAGCAAAGCTTCAAAACAAAAGTGCTCATCAGTTGGCCATGGAAGTTATCCGCAATTATGTTGCTTCCAACCAAAATGGAAAAGGCCAATGA 2058 0.4329 MTTSFGAATLSDPKVQIPSFHGLRSASASASALTRSALSIPSSSPTLSLIRAVSTPAKSETVTEKRSKVEIFKEQSNFIRYPLNEDLLTDAPNLSEPSTQMIKFHGSYQQYNRDERGSRTYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVIKKDLKTVMSTIIRNMGSSLGACGDLNRNVLAPAASFVRKDYLFAQKTAENIADLLAPQSGFYYDIWVDGERIMSSESPEVIQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTDDYGEPQGFNIYVGGGMGRTHRLESTFPRLAEPLGYVPKEDILYAVKAIVVAQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGRKFEPFRALPEWEFKSYLGWHQQGDGSLFYGLHVDNGRIAGKMKKTLREVIEKYKLDVRITPNQNIILTGIRAAWKRPITTALAQVGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRAVFEKVGLKYNESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNQSQTSLARSFMDKVKLQDLEKVLEPLFYYWKQKRQSKESFGDFTTRKGFEKLKEYVEKWEGPVVAPARYNLKLFADKETYEAMDGLAKLQNKSAHQLAMEVIRNYVASNQNGKGQ* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00259 685 FunFam Sulfite reductase [ferredoxin], chloroplastic 486 636 - -
Rops3g00259 685 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 539 555 IPR006066 GO:0016491|GO:0020037|GO:0051536
Rops3g00259 685 Gene3D Sulfite Reductase Hemoprotein;Domain 2 396 482 - -
Rops3g00259 685 Gene3D Sulfite Reductase Hemoprotein, domain 1 190 395 IPR045854 -
Rops3g00259 685 Pfam Nitrite and sulphite reductase 4Fe-4S domain 489 628 IPR006067 GO:0016491|GO:0020037|GO:0051536
Rops3g00259 685 PRINTS Sirohaem Fe-binding site signature 539 557 IPR006066 GO:0016491|GO:0020037|GO:0051536
Rops3g00259 685 PRINTS Sirohaem Fe-binding site signature 490 508 IPR006066 GO:0016491|GO:0020037|GO:0051536
Rops3g00259 685 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 120 178 IPR005117 GO:0016491
Rops3g00259 685 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 412 474 IPR005117 GO:0016491
Rops3g00259 685 FunFam Sulfite reductase [ferredoxin], chloroplastic 190 399 - -
Rops3g00259 685 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 43 632 IPR045169 GO:0016491|GO:0020037|GO:0051536
Rops3g00259 685 NCBIfam sulfite reductase, ferredoxin dependent 57 629 IPR011787 GO:0020037|GO:0050311|GO:0051539
Rops3g00259 685 Pfam Nitrite and sulphite reductase 4Fe-4S domain 216 394 IPR006067 GO:0016491|GO:0020037|GO:0051536
Rops3g00259 685 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 488 638 IPR045854 -
Rops3g00259 685 FunFam Sulfite reductase [ferredoxin], chloroplastic 399 482 - -
Rops3g00259 685 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 409 481 IPR036136 GO:0016491
Rops3g00259 685 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 63 190 IPR036136 GO:0016491
Rops3g00259 685 Gene3D Sulfite Reductase Hemoprotein, domain 1 486 633 IPR045854 -
Rops3g00259 685 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 191 406 IPR045854 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00259 K00392 - gmx:547693 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00259 3 3197934 3202317 Rops3g00259 3 3197934 3202317 ECH