Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00248 ATGACGACAGAGGATCGGAAAGTGCCGAAGCTTCCAGAGAAAGGAAAGCGCAACATCCTCATCACCAGTGCCTTACCTTACGTCAACAACGTCCCTCATCTCGGCAACATTATTGGATCTGTGTTGAGTGCTGATGTGTTTGCACGTTACTGTCGGCTTCGGGGTTATAATACTATTTATATCTGCGGTACTGATGAGTATGGAACAGCAACAGAGACTAAAGCCATGGAAGAGAATTGCTCTCCCAAAGAGATTTGTGACAAATACCATGCTATTCATAAGGAGGTCTACAATTGGTTCAATATAAGTTTCGATGAATTTGGGCGGACCTCCTCCCCTCAGCAAACTGAAGTTTGCCAGGCAATTTTTCATAAAGTATTTGAGAACAATTGGCTCTCCGAGAACACAATGCAGCAGCTTTACTGTGATACATGCGAAAGGTTCTTAGCTGATCGGCTCGTGGAGGGTACGTGCCCAACTCCAGGGTGTGAGTATGATTCTGCTCGAGGAGACCAATGTGAGAAGTGTGGAAAGCTTCTAAATCCAACAGAATTGAAAAATCCCAGGTGCAAGGTTTGTCAAAAAAGTCCTCGTATTCGTGATACGGACCACTTGTTTCTTGAACTCCCTCTATTGAAAGATAAATTGGAAAAATACATCAACGAGATGTCTGTGGTTGGATCGTGGAGTCAGAATGCTATCCAAACAACAAATTCATGGCTTCGGGAAGGATTAAAGCCACGTTGTATTACCAGGGATCTGAAGTGGGGGGTTCGTGTTCCACATGAAAAATACAGTGATAAGGTTTTCTATGTTTGGTTTGACGCACCTATTGGATACGTCTCAATCACTTCATGCTACACACCTGATTGGGAGAAATGGTGGAAAAACCCAGAGAACGTGGAGTTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTCTACTTGGAACTGGTGAAAATTGGACTTTAATGAAGACTATTAGTGTTACTGAATACTTGAACTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGCATTGGGGTATTTGGAAACGATGCAAAAGAGACTAATATTCCAGTTGAAGCATGGAGGTATTACTTGCTCACAAATAGGCCTGAGGTATCTGATACATTATTTACATGGCCTGACTTGCAAGCAAAATTAAATAGTGAGTTGCTGAATAATTTGGGCAACTACATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCACTATTCCCACTGTTCCTGATGATGTAAGTGGTGACACCCATGATCCAACCAAAAAATTGGCTGATAAAGTTACTGCATATCTGGAGCAATACATAGAAGCAATGGAGAAGGTTAAACTAAAGCAAGGGTTGAAAATTGCAATGAGCATATCCGGCGAGGGGAATGCATATCTGCAGGAAACTGAATTCTGGCGCCTTTACAAGGAAAACCAATCTCTCTGCTCCCTTGTTATGAAGACTGCAGCTGGGATCGTTTATCTTCTTGCTTGTTTATTGGAACCTTTTATGCCATCTTTCACTCTTGAGGTATTTAAGCAGCTAAATTTGTCCGTGGAGAAACATCTTTCACTTTGTGATGATAAGGGAGATGTTGATAGGGTAAAAAAACCCTGGGACATCTTAAGTGCTGGTCATAAAATCGGAACACCCAAGCCATTGGTCAGGGAGCTGAAAGATGAAGAAGTGGAGTTCTACAGGAAGAAGTTCGCAGGAAGTCAAGCTGACAGGATTGTGCGTGAAGAGGCGGAAGCTAAAAATCTTGCTGACCAACTGAAGAAAACAAAAGTTTCAGATGCCAATGCAAAGAAAAAATCATCAGCAAAATCATCAAATGAAGCCAAAAACAAGGCTGCTGCTGAACCAGATATTACCATCACAAGGCTTGATATTCGGGTTGGTCTCATTAAAAAAGCTGAAAAACATCCTGATGCAGATTCACTATATGTTGAAGAGATTGATGTTGGTGAAGCACAGACCAGAACTGTTGTCAGCGGACTTGTCAAGTATATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGCAACCTAAAGCCAGCAACCATGAGGGGCATTAAATCCCACGCAATGGTTCTTGCTGCTTCCAATGATGATCATACCAAGGTCGAGTTGGTTGAACCTCCCAGTTCTGCTAATGTTGGAGAAAGAATTACATTCCCAGGGTATGAAGGTGATCCTGATGAACTCTTAAATCCAAAGAAGAAAGTTTGGGAGACATTGCAAGTCGATCTGCACACCAATGAGGAATTAGTGGCATGCTACAAAAATGTTCCACTCACCACATCAGCTGGCATTTGCAAGGTTTCATCCATACGCAGTGGATCTATTAGGTAG 2418 0.4222 MTTEDRKVPKLPEKGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARYCRLRGYNTIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHKEVYNWFNISFDEFGRTSSPQQTEVCQAIFHKVFENNWLSENTMQQLYCDTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCQKSPRIRDTDHLFLELPLLKDKLEKYINEMSVVGSWSQNAIQTTNSWLREGLKPRCITRDLKWGVRVPHEKYSDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKETNIPVEAWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNYINRVLSFIAKPAGQGYDSTIPTVPDDVSGDTHDPTKKLADKVTAYLEQYIEAMEKVKLKQGLKIAMSISGEGNAYLQETEFWRLYKENQSLCSLVMKTAAGIVYLLACLLEPFMPSFTLEVFKQLNLSVEKHLSLCDDKGDVDRVKKPWDILSAGHKIGTPKPLVRELKDEEVEFYRKKFAGSQADRIVREEAEAKNLADQLKKTKVSDANAKKKSSAKSSNEAKNKAAAEPDITITRLDIRVGLIKKAEKHPDADSLYVEEIDVGEAQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPATMRGIKSHAMVLAASNDDHTKVELVEPPSSANVGERITFPGYEGDPDELLNPKKKVWETLQVDLHTNEELVACYKNVPLTTSAGICKVSSIRSGSIR* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00248 805 Gene3D - 402 574 - -
Rops3g00248 805 CDD tRNA_bind_EMAP-II_like 642 746 - -
Rops3g00248 805 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 642 805 - -
Rops3g00248 805 MobiDBLite consensus disorder prediction 614 637 - -
Rops3g00248 805 NCBIfam methionine--tRNA ligase 19 540 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Rops3g00248 805 PANTHER METHIONINE--TRNA LIGASE 5 802 IPR023458 GO:0004825
Rops3g00248 805 FunFam Methionine--tRNA ligase 154 190 - -
Rops3g00248 805 FunFam Methionine--tRNA ligase cytoplasmic 402 575 - -
Rops3g00248 805 Pfam tRNA synthetases class I (M) 19 413 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops3g00248 805 CDD MetRS_core 18 388 IPR033911 GO:0004825|GO:0006431
Rops3g00248 805 PRINTS Methionyl-tRNA synthetase signature 21 34 IPR033911 GO:0004825|GO:0006431
Rops3g00248 805 PRINTS Methionyl-tRNA synthetase signature 102 113 IPR033911 GO:0004825|GO:0006431
Rops3g00248 805 PRINTS Methionyl-tRNA synthetase signature 270 281 IPR033911 GO:0004825|GO:0006431
Rops3g00248 805 PRINTS Methionyl-tRNA synthetase signature 400 411 IPR033911 GO:0004825|GO:0006431
Rops3g00248 805 PRINTS Methionyl-tRNA synthetase signature 54 68 IPR033911 GO:0004825|GO:0006431
Rops3g00248 805 PRINTS Methionyl-tRNA synthetase signature 305 320 IPR033911 GO:0004825|GO:0006431
Rops3g00248 805 SUPERFAMILY Nucleotidylyl transferase 16 400 - -
Rops3g00248 805 MobiDBLite consensus disorder prediction 614 629 - -
Rops3g00248 805 Pfam Putative tRNA binding domain 649 743 IPR002547 GO:0000049
Rops3g00248 805 Gene3D - 642 805 IPR012340 -
Rops3g00248 805 Coils Coil 593 616 - -
Rops3g00248 805 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 154 190 IPR029038 -
Rops3g00248 805 Gene3D HUPs 18 401 IPR014729 -
Rops3g00248 805 CDD Anticodon_Ia_Met 397 533 IPR041872 -
Rops3g00248 805 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 26 37 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops3g00248 805 ProSiteProfiles tRNA-binding domain profile. 643 746 IPR002547 GO:0000049
Rops3g00248 805 Gene3D - 154 190 IPR029038 -
Rops3g00248 805 SUPERFAMILY Nucleic acid-binding proteins 644 803 IPR012340 -
Rops3g00248 805 Pfam Anticodon binding domain of methionyl tRNA ligase 437 592 IPR041872 -
Rops3g00248 805 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 405 589 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops3g00248 805 Hamap Methionine--tRNA ligase [metG]. 17 587 IPR023458 GO:0004825
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00248 Rops-Chr3 3069237 3076229 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00248 K01874 - gmx:100809861 1484.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00248 3 3069237 3076229 Rops3g00248 3 3069237 3076229 ECH