Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00233 ATGAGTGACAATTTGATGGAAAAAGTGAACGCCTTAGGAGAGCGCCTCAAAATTGGTGGGGCTGAGGTGGGTCGGAAGATGAGTGCTGGGTTGAGTTCTGTGAGCTTCAAGGTCAAAGAGTTTTTTCAGGATCCAAACCATGCTGATAAACTAGTTGAGGATGCTACTTCTGAGACCCTTGATGAGCCTGACTGGTCTATTATTCTTCATCTCTGTGACTTGGTCAATACTGAAAGACTTAACATTTCTGAAGTGGTACGTGCAATAAAGAAAAGGGTCGTGACAAAGAGTCCTAGAGGTCAGTACCTGGCTTTGGTTTTGCTTGAAGCATTAGTCAAGAACTGTGACAAGGCTTTCTTTGAGGTGGCAACTGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGACCCTCAGACTGTTGTTAATAACCGGAACAAGGCTTTGATGATGATTGAGGCATGGGGAGAGTCAACCACTGAGCTACGTTATCTGCTTGTTTATGCGGAAACTTACAAGAGTTTGAAATCAAGGGGTATTCGGTTCCCTGGTCGTGACCATGAAAGCTTGGCTCCTATTTTTACTCCTCCTTGTACTACCTCTGCTCCAGAGGCTAATGTCAGTCTTGCCCATCTTATTCAGCATGATATTCCTGAGCAAAGTTTTACATCTGAACAAAGAAGGGAAGCTTTTGATGTTGCAAGAAATAGCATTGAGCTTCTCTCTACCGTGTTATCTTCTTCACCGCAACAAGATGTTTTAAAGGATGATTTGACCACCACATTAGTACAACAATGCCGTCAGTCGCAATCTACTGTCCATAGAATCATTGAGACTGCTGGGGACAATGAAGCATTGCTTTTTGAGGCCTTGAATGTTAACGATGAGATTCAGAAGGTTCTCTCCAAATATGAAGAGTTGAAGAAGCCTACTACAGTTGTTCCACTTGAACCTAAACAGGCTATGATTCCTGTTGCCATGGAGCCTGATGAGTCACCCCATTTCACAATAGAGGATGAGGATGCCTTGATTAGAAAGCCAGGTGGTTCAAGAGTTGGAGTCCATGGAGTGAGCCACGATGACATGATGGATGATCTTGATGAGATGATTTTTGGCAAAAAGGGTGGGGATACATCTGAATGGAGACAATATCCAAAGAAACAACAATCATCAAAAGATGATCTCATCTCCTTCTAA 1197 0.4311 MSDNLMEKVNALGERLKIGGAEVGRKMSAGLSSVSFKVKEFFQDPNHADKLVEDATSETLDEPDWSIILHLCDLVNTERLNISEVVRAIKKRVVTKSPRGQYLALVLLEALVKNCDKAFFEVATERVLDEMVKLIDDPQTVVNNRNKALMMIEAWGESTTELRYLLVYAETYKSLKSRGIRFPGRDHESLAPIFTPPCTTSAPEANVSLAHLIQHDIPEQSFTSEQRREAFDVARNSIELLSTVLSSSPQQDVLKDDLTTTLVQQCRQSQSTVHRIIETAGDNEALLFEALNVNDEIQKVLSKYEELKKPTTVVPLEPKQAMIPVAMEPDESPHFTIEDEDALIRKPGGSRVGVHGVSHDDMMDDLDEMIFGKKGGDTSEWRQYPKKQQSSKDDLISF* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00233 398 Gene3D - 40 201 IPR008942 -
Rops3g00233 398 FunFam TOM1-like protein 2 41 200 - -
Rops3g00233 398 SUPERFAMILY GAT-like domain 180 309 - -
Rops3g00233 398 PANTHER TOM1-LIKE PROTEIN 1 1 398 IPR044836 GO:0035091|GO:0043130|GO:0043328
Rops3g00233 398 Pfam GAT domain 235 309 IPR004152 GO:0035091|GO:0043130
Rops3g00233 398 Pfam VHS domain 47 179 IPR002014 GO:0035091|GO:0043130
Rops3g00233 398 Gene3D - 204 310 IPR038425 -
Rops3g00233 398 SUPERFAMILY ENTH/VHS domain 45 183 IPR008942 -
Rops3g00233 398 MobiDBLite consensus disorder prediction 374 389 - -
Rops3g00233 398 ProSiteProfiles GAT domain profile. 222 309 IPR004152 GO:0035091|GO:0043130
Rops3g00233 398 CDD VHS 48 177 - -
Rops3g00233 398 MobiDBLite consensus disorder prediction 374 398 - -
Rops3g00233 398 CDD GAT_GGA-like_plant 231 307 - -
Rops3g00233 398 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Rops3g00233 398 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00233 Rops-Chr3 2951151 2955044 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00233 - - ccaj:109799203 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00233 3 2951151 2955044 Rops3g00233 3 2951151 2955044 ECH