Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00194 ATGGGAGTTATTGGCTTTGAAATCAATGTCAATTCTTCTTCTGCTTCTGCTTTGCATTATGGTGGGAATTCTTTCTCTTCGTATGTGGTTCCTATTTCTTCGAGACCCTTTTTTGGTAATGCTTTGAACACGAGGGTTGTAAGGAGGTTTCAGGTCTCTCATACTCGAAAGCTCAATTCTGGGCCAGTTATTGTTTCACTTAACGATGGCTCTTCTTCTGGGTTGATTAGTCCCAATGAGTTGGAATTTAAGCCATCCTTCGATGAATATTTGAAGGCTATGGAATCTGCTAGAACTGATAAGGGCAAGAAGCATGCTACTGCTACTGCTCAAAAACAGAAGACTGCGGAAATGGGAGATAAAGGAAATAAAATTAAAATTTTTAAAAGGGTTGGAGAGAAAATTGATAGAAAAGATGGGTTTGAAGCTGCTAAAGAAGACGTGGCATTAAAAGTTGATGAAGCAGTTATGCATAAAGAAGGTTTCTCCACAAGTAATGGGAAGGTCAGAGGAAAACCAACTAAAGGATTTAAAAATGATTATGATAGGGGAAGAAGCGACCTTGGTGTAAGGGCAAAGCAGAAACATGGGGCTAACATAAGACAAGATGGGTGGTTGAAACGCCAGAGTCATAGTTTAGAACCAGAATCTGATGACTGCAGTGTGATTGAGAGTCAAAGCAAAAGTGGAAGTGGAAGGATAAGCAATAACATAATTAGGTCCAATTCGAATGGTAGCCGTGGGAGTGTCATAGAGAGGGGAGTCACTCATGATTTATATTCTTCAAAGATGTCAGGAGAAAAGGTTGTTAGTGGCAGACGAAGGGATCACAACACACAGGGTAAAACCCCTGGTGGAGATAAAATTGTAGCTAGCAATAAAGTTATGGATAGAGGGTTTGGTAGAAGACATACTGAAATTGAGACTTTAGTAAATAGAAATAGACAGGAAAATGTCAAATTGAATGGAAGAAGCAAGCGTTTCCTTGATAGGGGTTATGATTCTGACAACTTGGAGGTGGAACGAGTAGCATTCAAGAGTCTTCAGGACCCAAACAATGTTATCAGCAAGATACAATTTTCACATAAGGCAATGGAGGAGAGAATCCAGAAGCTAGCCAAATTGTTGAATGGTGCGGATATCAATTTAGCTGAATGGATGTTTTCTAAGATGATGAGAAGTGCAAAACTCAAATTTAATGACTATTCTATAACGAGGGTTATCATACTCTTGGGAAATCTAGGAAACTGGCGGCGAGTGATACAAGTCATTGAATGGCTTCAAAGGCGTGAGCGTTTCAAGTCCCATAAGCTAAGGAATATATATACCGCTGCTCTTAATGCACTTGGGAAGTCACGGAGACCTGTAGAGGCACTAAATGTATTTAATGCAATGCAGCAACAAATGTCCTCATATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTTGGACAAGCAGGGCACTTGAAGGAACTCTTTGATGTGATTGATATCATGAGATCTCCACCAAAGAAGAAATTGAAAACAGGGATATTTGAGAACTGGGACCCTAGGCTGGAACCAGATATTGTAGTCTATAATGCAGTCCTTAATGCTTGTATTAAGCGGAAACAGTGGGAAGGGGCCTTTTGGGTTTTACAGCAGTTAAAGAAGCAGGGGCTACAACCTGGTGCTGCAACTTATGGCCTAGTAATGGAGGTGATGTTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCGGAAAACTTCAGAAGTCTTCTATTCCCAATGCATTGACATATAGAGTTCTTGTAAATACATCTTGGAAAGAGGGAAAAACTGACGAGGCTATATCGGTTGTCCAAGAAATGGAAAGACGGGGAATTGTAGGTTCTGCTTCTCTTTATTACGATCTAGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCATGAGGCACTGATGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTAGTAGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAGATTTGTGCTCCGAATCTGGTTACTTGTAACATAATGCTGAAAGCTTACCTGGAACATGGGATGTTTCAAGAAGCTAAGGAGTTGTTTGAGCAAATGTCGGAAAACACAAATCATCCGAGCACAAACACTGATTATAAAATGCGGGTGATACCAGATATATATACATTCAATACCATGTTAGATGCATGTGTTGCAGAGAAGAGATGGGATTATTTTGACTATGTCTATCAAAAGATGCTGTACCATGGTTACCACTTCAATCCAAAACGGCATCTTCGAATGATACTGGAGGCTTTAAGAGCTGGAAAGGAAGGGCCATTGGAGTTAACATGGAAGCACTTGACCGCTACAGATCGAATTCCACCAGCTCCTCTGATCAAGGAGAGGTTCTGTACAAAGCTTGAGAAAGATGACTATGTTGCTGCTCTGACATGCATCACCAATAACCCCACAAAAGACTTGCAGCCATTTTCCAAGTCGTCTTGGTTGAATCTATTCAAAGAAAATTCTCAACGCTTTCAGAAGGATACACTTGTTAGACTAATGAATGGGGCTAGCAATATAGCTTCCAATAGTAGCTTGCCAAATCCAATACTTATGGATTTAATACAATCATGTAAAGAAATTTGTTTTGTCACTGACCTCAGTGAAGCTGACATAGATTCAGTGAAAAATGTGTTTGCAGTAGAAAGCAAACTGGTAGAAGCCAACTCTAGATGA 2796 0.4013 MGVIGFEINVNSSSASALHYGGNSFSSYVVPISSRPFFGNALNTRVVRRFQVSHTRKLNSGPVIVSLNDGSSSGLISPNELEFKPSFDEYLKAMESARTDKGKKHATATAQKQKTAEMGDKGNKIKIFKRVGEKIDRKDGFEAAKEDVALKVDEAVMHKEGFSTSNGKVRGKPTKGFKNDYDRGRSDLGVRAKQKHGANIRQDGWLKRQSHSLEPESDDCSVIESQSKSGSGRISNNIIRSNSNGSRGSVIERGVTHDLYSSKMSGEKVVSGRRRDHNTQGKTPGGDKIVASNKVMDRGFGRRHTEIETLVNRNRQENVKLNGRSKRFLDRGYDSDNLEVERVAFKSLQDPNNVISKIQFSHKAMEERIQKLAKLLNGADINLAEWMFSKMMRSAKLKFNDYSITRVIILLGNLGNWRRVIQVIEWLQRRERFKSHKLRNIYTAALNALGKSRRPVEALNVFNAMQQQMSSYPDLVAYHSIAVTLGQAGHLKELFDVIDIMRSPPKKKLKTGIFENWDPRLEPDIVVYNAVLNACIKRKQWEGAFWVLQQLKKQGLQPGAATYGLVMEVMFSCGKYNLVHEFFGKLQKSSIPNALTYRVLVNTSWKEGKTDEAISVVQEMERRGIVGSASLYYDLARCLCAAGRSHEALMQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEICAPNLVTCNIMLKAYLEHGMFQEAKELFEQMSENTNHPSTNTDYKMRVIPDIYTFNTMLDACVAEKRWDYFDYVYQKMLYHGYHFNPKRHLRMILEALRAGKEGPLELTWKHLTATDRIPPAPLIKERFCTKLEKDDYVAALTCITNNPTKDLQPFSKSSWLNLFKENSQRFQKDTLVRLMNGASNIASNSSLPNPILMDLIQSCKEICFVTDLSEADIDSVKNVFAVESKLVEANSR* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00194 931 Pfam PPR repeat 596 625 IPR002885 -
Rops3g00194 931 Pfam PPR repeat 746 775 IPR002885 -
Rops3g00194 931 Pfam PPR repeat 442 467 IPR002885 -
Rops3g00194 931 Gene3D Tetratricopeptide repeat domain 421 587 IPR011990 GO:0005515
Rops3g00194 931 Gene3D Tetratricopeptide repeat domain 588 652 IPR011990 GO:0005515
Rops3g00194 931 MobiDBLite consensus disorder prediction 163 185 - -
Rops3g00194 931 SUPERFAMILY TPR-like 593 727 IPR011990 GO:0005515
Rops3g00194 931 MobiDBLite consensus disorder prediction 219 241 - -
Rops3g00194 931 MobiDBLite consensus disorder prediction 263 290 - -
Rops3g00194 931 NCBIfam pentatricopeptide repeat 699 727 IPR002885 -
Rops3g00194 931 NCBIfam pentatricopeptide repeat 746 772 IPR002885 -
Rops3g00194 931 NCBIfam pentatricopeptide repeat 526 559 IPR002885 -
Rops3g00194 931 NCBIfam pentatricopeptide repeat 441 474 IPR002885 -
Rops3g00194 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Rops3g00194 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Rops3g00194 931 FunFam Pentatricopeptide repeat-containing protein 367 513 - -
Rops3g00194 931 Gene3D Tetratricopeptide repeat domain 653 809 IPR011990 GO:0005515
Rops3g00194 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Rops3g00194 931 MobiDBLite consensus disorder prediction 211 241 - -
Rops3g00194 931 Pfam PPR repeat family 523 566 IPR002885 -
Rops3g00194 931 Pfam PPR repeat family 696 735 IPR002885 -
Rops3g00194 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Rops3g00194 931 MobiDBLite consensus disorder prediction 268 282 - -
Rops3g00194 931 MobiDBLite consensus disorder prediction 98 118 - -
Rops3g00194 931 PANTHER OS01G0674700 PROTEIN 37 907 IPR044645 GO:0009658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00194 Rops-Chr3 2544265 2553599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00194 523 754 Glycosyltransferase AT1G05670 22.650 3.44e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00194 - - aprc:113864568 1427.92