Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00182 ATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTCTTAAGTTCATCTTACCATTACTCTGATATTATAGAAAAGCTCTCTTCTGGCAGTGATTTTGGATCCACACACTATCAGATTGCTCCTACAAAATCTGTAGTAATTGCCAAGAAGTCATCCAACTACACTCCAACTTTTCCAACATCCGACCGGCAGAATCTGTCCATCAAGGCTCTCAAGGAACATGTTGATGGTGCCCCTGCTATTGCTGATGCATGGTTTCAGAGTTACAATCCTAAGGAGTTAGAGTTGGAAAGCTCTGACATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAACCTTTCATTTGAAAGGGAAGTGCTAACTGAGCATTCGAGAAAAGAGAAAAGCCGTAGGAAAGTGGCAGTAACTTGTTCTGGGGTGTCTGCTAGGCAAAGAAGAATGAATACTAAGAGGAAGATCACTACTAAAACTGGCCCTGCAATGATGCAACCTGGTGCTGCTATGCAGCTGAGGTCCATAATCAGTCCAGAACTGCTTCAAAGCCGCTTGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGGAATTGCTCTCTCATGCTGAGGTTGTAAAGCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTGGAGGAGCATAAATCCAGACTGAAGGAAAGATTAGGATGTGACCCCTCTGATGATCAAATTGCAACTTCATTGAAGATTTCTCGAGCTGAACTACGAACAAAAATGATAGAGTGCTCTTTGGCAAGAGAAAAGTTGACTATGAGCAATGTTCGCCTAGTTATGTCTATTGCTCAAAAATATGATAATATGGGTGCTGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTGCTTCGTGGGATTGAGAAGTTTGATTCTTCCAAAGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCACTAGTTGAGAATTCAAGAACATTAAGATTGCCCACTCATTTGCATGAGAGATTATCTTTGATCCGTAATGCGAAGTTTAAACTGGAAGAGAGAGGCATCACTCCAACTATTGATAGGATTGCAAAATGCCTTAACATGTCTCAAAAGAAAGTCAGAAATGCTACAGAGGCAGTCAGCAAAGTTTTCTCACTTGATAGGGAAGCTTTCCCCTCTCTGAATGGTCTTCCAGGAGAAACTCATCATAGTTATATTGCAGATAATCGGCTTGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATTAATGTGACCCTTGTGGAACGAGAGAGAGATATTATTCGTCTTTATTTTGGACTGGATAATGAATGTCTTACATGGGAAGACATTAGTAAACGGATTGGTTTGTCAAGAGAAAGAGTAAGGCAAGTGGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCGAGGAAGAAAGAGATGGAGGCCATGCTAGTGAAGCATTAA 1533 0.4181 MATAAVIGLSGGKRLLSSSYHYSDIIEKLSSGSDFGSTHYQIAPTKSVVIAKKSSNYTPTFPTSDRQNLSIKALKEHVDGAPAIADAWFQSYNPKELELESSDMGYSVEALLLLQKSMLEKQWNLSFEREVLTEHSRKEKSRRKVAVTCSGVSARQRRMNTKRKITTKTGPAMMQPGAAMQLRSIISPELLQSRLKGYVKGVVSEELLSHAEVVKLSEKIKVGLSLEEHKSRLKERLGCDPSDDQIATSLKISRAELRTKMIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKFKLEERGITPTIDRIAKCLNMSQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNRLENIPWNGVDEWALKDEVNKLINVTLVERERDIIRLYFGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKEMEAMLVKH* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00182 510 PRINTS Major sigma-70 factor signature 319 327 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 PRINTS Major sigma-70 factor signature 483 494 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 PRINTS Major sigma-70 factor signature 295 308 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 PRINTS Major sigma-70 factor signature 448 460 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 PRINTS Major sigma-70 factor signature 468 483 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 ProSitePatterns Sigma-70 factors family signature 1. 295 308 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 Pfam Sigma-70 region 3 350 420 IPR007624 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 Gene3D - 342 393 IPR036388 -
Rops3g00182 510 Pfam Sigma-70, region 4 447 496 IPR007630 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 Pfam Sigma-70 region 2 274 340 IPR007627 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 114 507 - -
Rops3g00182 510 Gene3D RNA Polymerase Primary Sigma Factor 107 341 - -
Rops3g00182 510 CDD Sigma70_r4 437 495 - -
Rops3g00182 510 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 426 500 IPR013324 -
Rops3g00182 510 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 343 399 IPR013324 -
Rops3g00182 510 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 194 341 IPR013325 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 NCBIfam sigma-70 family RNA polymerase sigma factor 267 497 IPR014284 GO:0003700|GO:0006352|GO:0006355
Rops3g00182 510 Gene3D - 426 504 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00182 Rops-Chr3 2438608 2443177 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00182 K03086 - gmx:100801884 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00182 3 2438608 2443177 Rops3g00182 3 2438608 2443177 ECH