Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00168 ATGAATACCCTCGTTTCAAAATCCAAACTTTCGACTCCTTCTTCAAGTTGTAGCAGCAGTGGCAGTAGCTGTAGTAGCAGCAGTGAGAGCGATGAGAGCCCCCTTTGTTCAAAACGGTTGGAGCTTCCATGCAAGGCCGTTTGGCATCGATCATTGGCGGTTCTCTCAGGTCATGTTGGTTCTGTTTCTTGCTTGGCCTTGTGTGGTGAGTTCATATTAAGTGCCTCACAAGGCAAAGACATTATAGTTTGGCAACAACCAGATTTGAGAGTGTTCACCAAGTTTGGACAAGGAGATGGGTCTGTGAAAGCACTTGTAACGGTTGGAAACAATGTTTTCACGGCGCATCAAGATAGTAGGATCAGGGTTTGGAAGGTTTCAAGGAGTTCAGAGAATGTGTTCAAGCTCGTTGATACCCTTCCCACTACCAAGGACTATTTGGGGAAGTTCATGAAGCAGAGTAACTATGTTCAAACTAGGAGGCATCATAAACGTTTGTGGATTGAGCATGCTGATAGCATTTCTTGTTTGGCTGTTCATAATGGGTTGATATATTCTGGGTCTTGGGATAAGACCCTCAAAGTTTGGAGGCTTTCAGATTTGAAGTGTTTGGAGTCTATTAAGGCTCATGATGATGCCATTAATGGCTTGGTTGCATGTAAAGGGATTGTGTATTCTGCTTCTGCAGATGGGAAGATTAAAGCTTGGGGGAAGGAAGGGAAGGCATCTCATTCTTTGAAAGGAGTTTTGGAGGGTCACAAAGATGTTTCCTTCAACTCTGTCATTGTTTCTGATGATGGAAAATGGATTTATGGAGGGGGTTCTGATGGTTTCGTTATGGGGTGGGAAAGGAGTGGATGTGGAAGTTTTGAGAGTTGGAAACTGGTTTCTGAGACCAAGGCACATGAAATGGCTGTTTTGTGTATGTGCCTAAGGGGGGAGTTTCTGTGCAGTGGCTCAGCAGATAAAAGCATAGGTATTTGGAGAAGAGAGGCTTTTGGTAAGCTTTGTAAAGTTGGGGTTATAAGTGGCCATGAAGGACCAGTGAAGTGTTTGCAAGCCTCATCTAATAGAATTGGTGGTGGCTTTTTACTATACAGTGGGAGCCTTGACAGAAGCGTGAGAGTTTGGTGGGTTCCAAGGGATAAAGCAGAAGTGGAAGACAACTCTACAACACTTAGCACACTGAATCAGTCTATCATCCCATGTTAG 1212 0.4414 MNTLVSKSKLSTPSSSCSSSGSSCSSSSESDESPLCSKRLELPCKAVWHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFTKFGQGDGSVKALVTVGNNVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLAVHNGLIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVACKGIVYSASADGKIKAWGKEGKASHSLKGVLEGHKDVSFNSVIVSDDGKWIYGGGSDGFVMGWERSGCGSFESWKLVSETKAHEMAVLCMCLRGEFLCSGSADKSIGIWRREAFGKLCKVGVISGHEGPVKCLQASSNRIGGGFLLYSGSLDRSVRVWWVPRDKAEVEDNSTTLSTLNQSIIPC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00168 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 206 IPR001680 GO:0005515
Rops3g00168 403 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Rops3g00168 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 377 IPR001680 GO:0005515
Rops3g00168 403 Pfam WD domain, G-beta repeat 248 282 IPR001680 GO:0005515
Rops3g00168 403 Pfam WD domain, G-beta repeat 169 196 IPR001680 GO:0005515
Rops3g00168 403 Pfam WD domain, G-beta repeat 339 377 IPR001680 GO:0005515
Rops3g00168 403 Gene3D - 16 155 IPR015943 GO:0005515
Rops3g00168 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 377 - -
Rops3g00168 403 MobiDBLite consensus disorder prediction 1 34 - -
Rops3g00168 403 CDD WD40 51 377 - -
Rops3g00168 403 SUPERFAMILY WD40 repeat-like 52 382 IPR036322 GO:0005515
Rops3g00168 403 SMART WD40_4 160 197 IPR001680 GO:0005515
Rops3g00168 403 SMART WD40_4 335 378 IPR001680 GO:0005515
Rops3g00168 403 SMART WD40_4 88 125 IPR001680 GO:0005515
Rops3g00168 403 SMART WD40_4 48 85 IPR001680 GO:0005515
Rops3g00168 403 SMART WD40_4 243 283 IPR001680 GO:0005515
Rops3g00168 403 SMART WD40_4 292 329 IPR001680 GO:0005515
Rops3g00168 403 SMART WD40_4 200 237 IPR001680 GO:0005515
Rops3g00168 403 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 381 IPR045182 -
Rops3g00168 403 Gene3D - 156 401 IPR015943 GO:0005515
Rops3g00168 403 PRINTS G protein beta WD-40 repeat signature 112 126 IPR020472 -
Rops3g00168 403 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
Rops3g00168 403 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Rops3g00168 403 MobiDBLite consensus disorder prediction 1 33 - -
Rops3g00168 403 FunFam BnaA09g28200D protein 157 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00168 Rops-Chr3 2302395 2303606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00168 157 377 Miscellaneous Gene Families AT5G08390 24.561 1.88e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00168 - - gmx:100775295 660.988