Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00166 ATGACTGATTCTAAGGTTCTACTATTTGGGTCATTTACCGAAGATGAAACCAAATCATTGCTGCAAAAGCAGTCTTCTGGGGGAAATGAAAAGCCCGTGGAAAAGAATCAGCTGCAATTTGGTTCTCTGAATTCTGTTAGTGTTTCATCAAGCAACCTGAATTCATCAAAAGCACCAGAGAGTGCTCCACCCGCTGATTCTCAGAAATGTAATGAAGTGAATGGTGTCAGTGTTAGTGATAATTTACCTGAAGTATCAGGAACTGCAAAAGAGAATGGCAGCATTACCCATTTCTCCCTTAGTCCCACAAGTATCATTAGTGCAAACCAAGTCAAAGAAAATAATGTGTATTCTGTTACACTGCTTGATGAAGATGGTCCCTCAAACAAATTTACGAATTTGAGCTTGGATGCTTCTGAGGCTGAAAGCTTGAAGAATGTACATAAAACTGGCAGTGGTGATGATTTTTCATCAAAATTAACTGATCAAGAGTCGAGAAAGACACCTAATGGGCATGCTGTTATGCATGTTAAGGATCTACTGCCTCGAGGCCTTATTAACTCTGGGAATCTGTGCTTTCTTAATGCAACTATGCAGGCTCTTTTGGCTTGTTCTCCTTTCATTCAGCTTTTGCAGGAATTAAGAATTCGCAACATTCCTAAGGTTGGCTATCCCACATTGACCGCATTTGCTGAGTTTATAACTCAATTTGACATGCCAAGCGGAACACAATTAAAGAAGAAAGATACAGATTCTTTTGAGTCTGGAAAGGCATTTTGCCCTGTTATGTTTGAAGGTGTTCTAAGAAATTTTACTCCAGATGTGCCAAATAGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAAGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTGCTGAAGCTTGAAGGACACCTTTCCAGTCTTGATAGTGGTGGATCTTCTCTAGTTTCTTCTATGGAAGATGATGAATGGGAAACAGTGGGGCCAAAGAATAAATCTGCCGTAACAAGGACTCAAAGCTTTGTTCCATCAGAATTAAGTGGTATTTTTGGAGGACAACTCAGAAGTTTGGTGAGAGCTAAAGGAAATAGAGCTTCTGCCACTGTTCAACCATATCTCTTGCTTCATCTTGACATTTATCCTGATGCTGTCCGCACGATTGAGGATGCACTTCACTTGTTTTCTGCACCAGAAAATCTTGAAGGATACCGAACATCACTCACTGGGAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTACAAATACAGAAACTTCCAAAAATAATGATATTGCACCTGATGCGTTTTAGTTATGGAAGCCAGGGAAGCACCAAGTTGCATAAGCCTGTGCATTTTCCTCTTGAGTTTGTATTGGGTCGTGACTTGCTTGTTTCACCATCTACTGAGGGTCGAAAATATGAACTTGTTGCCACAATTACTCATCATGGAAGGGAGCCTTCAAAAGGGCACTACACAGCTGATGCCCAGTACCCCAATGGTCAGTGGCTACGTTTTGATGATGCATCTGTCTTTGCTATTGGAGCAAATAAGGTTCTGCATGATCAGGCTTATGTCCTTTTCTACAAACAGATCACAATATCCATTGCTCAGGGCTCAGATTGCCAAATTGTCATAAATGGTTGTTCCAATCTAGGGGATTCACTCTGA 1683 0.4088 MTDSKVLLFGSFTEDETKSLLQKQSSGGNEKPVEKNQLQFGSLNSVSVSSSNLNSSKAPESAPPADSQKCNEVNGVSVSDNLPEVSGTAKENGSITHFSLSPTSIISANQVKENNVYSVTLLDEDGPSNKFTNLSLDASEAESLKNVHKTGSGDDFSSKLTDQESRKTPNGHAVMHVKDLLPRGLINSGNLCFLNATMQALLACSPFIQLLQELRIRNIPKVGYPTLTAFAEFITQFDMPSGTQLKKKDTDSFESGKAFCPVMFEGVLRNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGHLSSLDSGGSSLVSSMEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLHLDIYPDAVRTIEDALHLFSAPENLEGYRTSLTGKAGVVTARKSVQIQKLPKIMILHLMRFSYGSQGSTKLHKPVHFPLEFVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTADAQYPNGQWLRFDDASVFAIGANKVLHDQAYVLFYKQITISIAQGSDCQIVINGCSNLGDSL* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00166 560 MobiDBLite consensus disorder prediction 19 71 - -
Rops3g00166 560 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 478 496 IPR018200 GO:0004843|GO:0006511
Rops3g00166 560 SUPERFAMILY Cysteine proteinases 179 534 IPR038765 -
Rops3g00166 560 MobiDBLite consensus disorder prediction 147 170 - -
Rops3g00166 560 Pfam Ubiquitin carboxyl-terminal hydrolase 184 533 IPR001394 GO:0004843|GO:0016579
Rops3g00166 560 FunFam Ubiquitin carboxyl-terminal hydrolase 174 535 - -
Rops3g00166 560 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 183 536 IPR028889 -
Rops3g00166 560 Gene3D Cysteine proteinases 171 536 - -
Rops3g00166 560 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 184 199 IPR018200 GO:0004843|GO:0006511
Rops3g00166 560 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 34 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00166 Rops-Chr3 2288798 2294456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00166 180 536 Miscellaneous Gene Families AT2G24640 28.375 5.59e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00166 K11841 - gmx:100799656 850.892