Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00160 ATGGATGGTTACGAAGCCACAAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATCATGGGTGTGCTTCTGATTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCTGAAGCCCTAGTTCACTCAGTGATTGTCAAAGCTCGCAAGGAGTTAGGATTACCTTCTAACTCTCCACCAACACCCTCTACTCCTCCTTCTCCCTCTCCTTTCCTTTCAAGGCAAAATTCCACTTCTTCAAGGCTTAGTGGTATTAACCTTCCTCCTCCTCTCACTATCCCAAACCCTTCTTCTACTTCAGCTTCTTGGGCTACTATGTCTGAGCTTCAAAACCCTGATGATTTGCTTGTTGGCTCATCTACTTCATCTTCCTTACCCTTTTATGCTAATGGAAGCTCAGATCCAATAGATGACTTTCAGCTTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCTACTATTGGCCACAAGAACCCTGATTTGTTTTACCCTCACTCAGACTTGTCTTCAAGTCCTACCACTGGTGCTGACCCTACTCTCTTTCCTTCCTATGGTTGGGGAGGGTCTCTTCACAGGAGGAGCTGCTCTGTGAATGATGCATGCTTGGGTTCTGAGGACCCAAATTCTGGGTTGGGGTGGAAGCCTTGCCTTTACTTTGCTCGAGGGTACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGAGGACTTGGAGATGCTGATGGTACTGCAATTGTTGGGTCTCCAAGCAAGATTGAGATGATGGACCAGTGCCATGAGCTCTTCAGATCTAAATCTGCTCAACAACAAAGAGTGGCTGCTGCTTCTCAACTCATGGCTTCTTCCTCTTTTCCATACTCCCCAAAGTGCATGAATTTCCTGTTACAACAGCAACAGAATGATACTCAAAGAGCGGCAGCTGCAGCTCTCATGATGAGTGAGGATTTGCAGAAGTTTGGAAGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAATAGTCCTGGAATGGTTAACCCAGCTTCTAGACAGATCTACTTGACCTTTCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGTATTTATGGGCCCGTTCAAGATGTGAGGATCCCATACCAGCAGAAGCGCATGTTTGGCTTTGTTACCTTTGTTTATCCGGAGACTGTGAAGCTTATTCTATCAAAAGGAAACCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTCAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACAGGAAGCAGCAACAACAAATAGATAGGGGAGATTTTTCTCCCTGTGGTACTCCTACTGGACTTGATGCTAGAGACCCTTATGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATTCTATGGAGGAGGAAATTGGAGGAGCAAGCTGATCTGCAGCAAGCTCTCGAGATCCAAAGTAGGAGGTTAATGGGTCTGCAACTTCTTGACATCAAGAAGCAACACCAGCGTGTACTTTCCACTGGAAGTCCAATTCCTTCCCCTACTCACTCTCCTAATATGTTCAATCAGAATCTTGTTCTTCCTTCGTTTCACAGAAGCTCAGAGTCCTCAGAGGAGAGTGGTTCAAGTTCTACTGCTCCAGCCAGTACTGCATCAGTTTCTGTTGGTCAGCAGCAGCAAGTCAACATTTCTGTTGGCAAGGAAGTGGTGGTCAATGGCGAGAATGGATATAGCAGTGAAGGCAACAATGGCAAGCAAAGCTCCAGTCATGGAGACCATGATTTGCCAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCTACAAAAGCTGCTGGAGACTACGTGGCTCCCTTCTCTAATGGACCTAATGAGGCCATTGATTCAGATGCCTCAGCTGCATCTGCCAACTCTAAATTTGGTACTAGTACATTACTTCCACCAGCAGCATCTACTCTGGACATGGGGTCTTTCAAATCCTTTAACTGCCAAATACCTAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTTGCAGGCACTGGTGGACCGATTGGCATTTAG 2106 0.453 MDGYEATRIVFSRIQNLDPENASKIMGVLLIQDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFLSRQNSTSSRLSGINLPPPLTIPNPSSTSASWATMSELQNPDDLLVGSSTSSSLPFYANGSSDPIDDFQLQDQLSFLNDGSPTIGHKNPDLFYPHSDLSSSPTTGADPTLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGTAIVGSPSKIEMMDQCHELFRSKSAQQQRVAAASQLMASSSFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEDLQKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQIDRGDFSPCGTPTGLDARDPYDLQLGGRMFYNTQDILWRRKLEEQADLQQALEIQSRRLMGLQLLDIKKQHQRVLSTGSPIPSPTHSPNMFNQNLVLPSFHRSSESSEESGSSSTAPASTASVSVGQQQQVNISVGKEVVVNGENGYSSEGNNGKQSSSHGDHDLPECLEHNLPDSPFASPTKAAGDYVAPFSNGPNEAIDSDASAASANSKFGTSTLLPPAASTLDMGSFKSFNCQIPRFSSGHGTIGMFAGTGGPIGI* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00160 701 SMART rrm1_1 353 423 IPR000504 GO:0003723
Rops3g00160 701 MobiDBLite consensus disorder prediction 432 459 - -
Rops3g00160 701 MobiDBLite consensus disorder prediction 584 625 - -
Rops3g00160 701 ProSiteProfiles Zinc finger C3H1-type profile. 220 247 IPR000571 GO:0046872
Rops3g00160 701 MobiDBLite consensus disorder prediction 61 111 - -
Rops3g00160 701 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 625 - -
Rops3g00160 701 MobiDBLite consensus disorder prediction 542 570 - -
Rops3g00160 701 MobiDBLite consensus disorder prediction 79 95 - -
Rops3g00160 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 428 IPR000504 GO:0003723
Rops3g00160 701 MobiDBLite consensus disorder prediction 586 600 - -
Rops3g00160 701 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 359 430 - -
Rops3g00160 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 245 IPR000571 GO:0046872
Rops3g00160 701 SUPERFAMILY CCCH zinc finger 223 245 IPR036855 GO:0046872
Rops3g00160 701 Gene3D - 214 311 - -
Rops3g00160 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 364 409 IPR000504 GO:0003723
Rops3g00160 701 CDD RRM_AtC3H46_like 354 423 IPR034365 -
Rops3g00160 701 SMART c3hfinal6 222 246 IPR000571 GO:0046872
Rops3g00160 701 SUPERFAMILY RNA-binding domain, RBD 364 447 IPR035979 GO:0003676
Rops3g00160 701 Gene3D - 350 448 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00160 Rops-Chr3 2207504 2212073 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00160 - - gmx:100801807 1151.35