Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00119 ATGAGGACACTAGCAAGACACACGTTGAAATTGGCTGGAAATCTAAATCCTATAACACCAATGCAGCAGAGAAGACTTGAAAAAGAAAAAAAGGAAAGCAACCAATGGACACCTCTGTGGTCTGGTGATGCAGAAGGCAACATATTTGAGCCAACACAAGGCCAACAATATTGGGATAGAACTCTTTCTGATCAGCTTACACCACCACCTTTAAAGAGGCAACCTGGAAGACGTAAAAAGTTGAGAAGAAAATATGGAAACAAAATTTCATTAAGTAACAAGAGACTGAGGAGATCAATTGCTGAGGCTATTTGCTCAAGATGTGGTGGGACCAACCATAACATGAGAACATGTAGACGGAACAAAGATAAGCAACCTGAGACTCAATCCGAGATTGAGTTGTCACAATCACATCCAAGCTCACAATCAGAATCCTCTCAACCAGAAAATGCAATAGGAGACAATGCAACTGTTGATACAATTACAAATCAGGTTGTTGGGGACAATGTACCTGCTATTGCATCCACAATTATTGTTGTTCCATCCTTAGGAGAACTATTACCAGGTTTTAGGCCTATTTTTGGTGTGATGCCACCTCTAATTAGGACTCCTTCTGTGAGTAATGTGTCCAGAACAACAACGCCTATTAGAACATTTTCTTTGCCACCAATGGCTACTTCAGATACCACCAACACAATGAGAGCAACAAGCCCAAAGCAGAGGGAGAGGGAAGTAAACAGAGCAGAGCAGAGGGAAAGGGAAGCGATGAATGCACCTGATCGTTACGAGCGTTTCGTCGTCCCCGAAGGCACCAAAAAGGTGTCATATGAGAGGGACACGAAGATCATCAATGCTGCTTCTTTCACCATCGAGAGAGAGGAACACACTATCGGCAACATTCTTCGCATGCAGCTGCACCGTGACCCTAACGTCTTATTCGCTGGATACAAGCTTCCTCACCCTCTTCAGTACAAAATTATTGTCAGGATACACACCACTAGTCAGTCTTCACCAATGCAGGCATATAACCAGGCTATTAATGATTTGGACAGGGAATTTGATCATTTGAAGAATGCCTTTGAGGCAGAGATGTTGAAGTTTTCAAGGGACTATTGA 1116 0.4283 MRTLARHTLKLAGNLNPITPMQQRRLEKEKKESNQWTPLWSGDAEGNIFEPTQGQQYWDRTLSDQLTPPPLKRQPGRRKKLRRKYGNKISLSNKRLRRSIAEAICSRCGGTNHNMRTCRRNKDKQPETQSEIELSQSHPSSQSESSQPENAIGDNATVDTITNQVVGDNVPAIASTIIVVPSLGELLPGFRPIFGVMPPLIRTPSVSNVSRTTTPIRTFSLPPMATSDTTNTMRATSPKQREREVNRAEQREREAMNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDREFDHLKNAFEAEMLKFSRDY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00119 371 FunFam DNA-directed RNA polymerase II subunit RPB11-like protein 256 370 - -
Rops3g00119 371 PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III 256 368 - -
Rops3g00119 371 MobiDBLite consensus disorder prediction 60 88 - -
Rops3g00119 371 CDD RNAP_II_RPB11 268 360 IPR037685 GO:0001055|GO:0005665|GO:0006366
Rops3g00119 371 MobiDBLite consensus disorder prediction 216 236 - -
Rops3g00119 371 Coils Coil 339 359 - -
Rops3g00119 371 MobiDBLite consensus disorder prediction 216 254 - -
Rops3g00119 371 MobiDBLite consensus disorder prediction 130 154 - -
Rops3g00119 371 MobiDBLite consensus disorder prediction 73 88 - -
Rops3g00119 371 MobiDBLite consensus disorder prediction 27 48 - -
Rops3g00119 371 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 286 358 IPR009025 GO:0006351|GO:0046983
Rops3g00119 371 SUPERFAMILY RBP11-like subunits of RNA polymerase 256 365 IPR036603 GO:0006351|GO:0046983
Rops3g00119 371 MobiDBLite consensus disorder prediction 237 254 - -
Rops3g00119 371 Hamap DNA-directed RNA polymerase subunit Rpo11 [rpo11]. 278 360 IPR022905 GO:0003899|GO:0006351
Rops3g00119 371 ProSitePatterns RNA polymerases L / 13 to 16 Kd subunits signature. 290 321 IPR008193 GO:0003677|GO:0003899|GO:0006351
Rops3g00119 371 Gene3D - 256 369 IPR036603 GO:0006351|GO:0046983
Rops3g00119 371 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00119 Rops-Chr3 1677057 1681681 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00119 K03008 - gmx:100527865 232.646