Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00116 ATGGCAGAGCAACAAGAGTTACCACAAACTGTTACTCAAAATACAAATGGAACTGCACGGTTAACTTGTTCTCTTGCCAACTCAATCTTTCCGCCGCCAAGGCCGAGGAAGAAACCCGCGCCGACGCAAGTTTCCTTCCTTCCTTCACGGTTGGTACCAGAGAGAGAGAGACCAGGCCATGGTTTGCTAAAAGGGATGATGGTGAAGTTTTCAGGATATTCCCTGGCCGTTTCATTTTCTCCTATAACCTCCAATGTCATTAAAAACAGTTGCAAATTCCCGGTGATTATTTCTCGTAGGAATTTCCGAAGCTTAAGGTTATTTTCTGCTAAACAACAATCACATGATAATAAACCTGGGGTGGTTGCAAAGTACTATCTTCCTCCTTGGTTTAGTGTTGCTCCCATGATGGATTGGACAGACCATCACTACAGGACTCTAGCACGCCTCATATCAAAACATGCTTGGCTGTACACGGAGATGCTTGCAGCTGAAACTATTGTCCATCAAAAGGACAATCTGGACAAATTCTTAGCATTTTCTCCAGACCAACATCCCATTGTGCTTCAAATTGGAGGGAGCAATATAGAAAATTTAGCAAAAGCAACTAAACTTGCTAATGCCTATTGCTATGATGAGATCAATTTAAACTGTGGATGTCCTAGTCCAAGAGTAGCTGGACATGGGTGCTTTGGTGTGCGTCTTATGCTTGACCCAAAGTTTGTTGCTGAGGCTATGTCAGCAGTTGCCTCCAATACAAACGTACCTGTCAGCGTCAAATGTCGAATTGGTGTAGATGATCATGATTCTTATGATGAGCTGTGTGATTTCATATTCAAGGTTTCTTCTCTATCACCCACTAAGCATTTCATAATTCATTCAAGGAAGGCACTGCTCAATGGCATTAGCCCAGCAGAAAATAGGAGTATTCCTCCACTAAAATATGAATACTTTTATGGCCTCTTACGTGACTTCCCTGACTTAACATTTACAATAAATGGTGGCATTACTAGTATTGACGAGGTCAATGCAGCTCGAGAAGCCGGGGCTCATGGTGTTATGATTGGACGTGCAGCATACAATAACCCTTGGAATATTTTGGGACATGTTGATACTGCAATTTATGGTGCAACAAGCTGTGGCCTTACTCGTCGTCAGGTCCTTGAAAAATATCAAGCCTATGGGGACTCGGTGTTGGGAAAATATGGACATAAGCCAACTGTACGAGATATTGTGAAGCCTTTACTCGGTCTTTTCCATTCAGCGCCTGGGAATGGACTTTGGAAGCGCAAAGCAGATGCTGCTTTCCGAAATTGCACGACAATAAAATCTTTTTTTGAAGAAACCCTTGATGCAATTCCCGACTCGGTATTGGATTCGCCTGTTGTGGAACCAACTCCAGGCCGCAGAGATCTTTTTGCTAATATGGACAGTTTACTGCCTCCTCCATACACAACAAGAGAAGAGGCTGTTGTTATATGCGCTTAG 1488 0.4315 MAEQQELPQTVTQNTNGTARLTCSLANSIFPPPRPRKKPAPTQVSFLPSRLVPERERPGHGLLKGMMVKFSGYSLAVSFSPITSNVIKNSCKFPVIISRRNFRSLRLFSAKQQSHDNKPGVVAKYYLPPWFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDKFLAFSPDQHPIVLQIGGSNIENLAKATKLANAYCYDEINLNCGCPSPRVAGHGCFGVRLMLDPKFVAEAMSAVASNTNVPVSVKCRIGVDDHDSYDELCDFIFKVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSIDEVNAAREAGAHGVMIGRAAYNNPWNILGHVDTAIYGATSCGLTRRQVLEKYQAYGDSVLGKYGHKPTVRDIVKPLLGLFHSAPGNGLWKRKADAAFRNCTTIKSFFEETLDAIPDSVLDSPVVEPTPGRRDLFANMDSLLPPPYTTREEAVVICA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00116 495 CDD DUS_like_FMN 131 364 IPR035587 -
Rops3g00116 495 Gene3D Aldolase class I 127 370 IPR013785 -
Rops3g00116 495 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 124 489 IPR004653 GO:0002943|GO:0017150
Rops3g00116 495 Pfam Dihydrouridine synthase (Dus) 133 441 IPR035587 -
Rops3g00116 495 FunFam tRNA-dihydrouridine(20/20a) synthase 128 375 - -
Rops3g00116 495 Gene3D - 380 444 - -
Rops3g00116 495 SUPERFAMILY FMN-linked oxidoreductases 130 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00116 Rops-Chr3 1609782 1617076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00116 K05539 - gmx:100779457 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00116 3 1609782 1617076 Rops3g00116 3 1609782 1617076 ECH