Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00100 ATGTCGTTTCCATCAGAGAACCCTAACCCTAACTCAAGTCCTACATTGAGGAAGAGTAAGAGAGGAGGAAGGTGGTCTGATATATGGCTGAAGCACACAAAATCGAAACCACTGAATCAGATGGTTGTGGCAATGCTTTCTTCTCCTAATCACAAAGCCAACAACAACAACCCCTTAATCTCCAATTTCTCAATCATTGACCGAACTCTTCTTTTGTCTGATGAGCTTCTTCTCAAGATTCTTTCCAAGCTCCCTGATTCTCAGAGGAACTCAAATTCCCTCGTTTGCAAACGCTGGCTTAATCTTCAGGGTCGTCTCGTTCGTTCCCTCAGGATCTTGGATTGGAACTTTCTCTTATCTGGTAGGTTGATTCATAGGTTCCCAAATCTCAATCATGTTGATTTGGTTCCTGGGTCTTTGATTTCAGCTTCAAGTTCCAGTCTTTTTGTTAGTAACCGGGTTTTTTCGATGCATATTGATTCTGGGTCTTCGCCAAATTGGTGTTTTTGTGATGAAAATATGCTCCCTATTGAGGTTATCGATAATGGGCTCAGTGCATTAGCCAGTGGGTGTCCTAATTTGCGTAGGGTTCAGATCATTGGTGCTAGTGAGATGGGTTTGCTCAGTGTGGCTGAGGAGTGTCCCACTTTGCAAGAATTGGAACTGCAGAGATGTAGTGACAATGTGCTGAGAGGGATTGCTGCTTGTGGGAATCTACAAATCTTGAAATTGGTTGGGAATGTGGATGGATTCTATAATTCTGTGGTTTCTGATATTGGGTTGACCATTTTGGCTCAGGGTTGTAAGAGGCTGGTGAAACTGGAGCTTAGTGGTTGTGAAGGGAGCTTTGATGGGATTAAAGCTATCGGTAAGTGTTGTCAAATGTTGGAGGAGTTGACCTTTTGTGATCATGGGATGGATGATGGATGGCTAGCTGCACTTTCATATTGTGAGAATTTGAAGACCTTGAGGTTCCAGTCTTGTAAGAGAATTGATCAGAATCCAGGATTAGAAGAGTATTTGGGTTCTTGTCCAGCACTTGAAAGGCTGCATTTGCAGAATTGCCAATTGAGGGATAAGAAGAACATTTCAGCCATGTTTTCTGTATGCAGGGCTGCCAGGGAGATTATTCTTCAGGACTGCTGGGGATTGGATAATGCCATGTTCAGTTTTGCAACTATTTGCAGGCGGGTAAAATTGTTTTACTTAGAAGGATGCTCATTGCTAACAACTGAAGGTTTGGAGTCTGTAATTCATTCCTGGAAAGAGCTTCAGAGCCTTAGAGTAGTCTCATGTAAGAATATAAAAGATAGTGAAATCTCTCCTGCATTAGCAACCTTATTTACCACACTCAAGGAATTGACATGGAGGCAAGATACCAAATCACTTCTTCAATCAAGTCTTGTGGGGCTAAGCATGGGAAAGAAAGGTGGTAAATTTTTCAAAAGGACATGA 1455 0.422 MSFPSENPNPNSSPTLRKSKRGGRWSDIWLKHTKSKPLNQMVVAMLSSPNHKANNNNPLISNFSIIDRTLLLSDELLLKILSKLPDSQRNSNSLVCKRWLNLQGRLVRSLRILDWNFLLSGRLIHRFPNLNHVDLVPGSLISASSSSLFVSNRVFSMHIDSGSSPNWCFCDENMLPIEVIDNGLSALASGCPNLRRVQIIGASEMGLLSVAEECPTLQELELQRCSDNVLRGIAACGNLQILKLVGNVDGFYNSVVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGKCCQMLEELTFCDHGMDDGWLAALSYCENLKTLRFQSCKRIDQNPGLEEYLGSCPALERLHLQNCQLRDKKNISAMFSVCRAAREIILQDCWGLDNAMFSFATICRRVKLFYLEGCSLLTTEGLESVIHSWKELQSLRVVSCKNIKDSEISPALATLFTTLKELTWRQDTKSLLQSSLVGLSMGKKGGKFFKRT* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00100 484 MobiDBLite consensus disorder prediction 1 21 - -
Rops3g00100 484 FunFam F-box protein At5g51380 65 332 - -
Rops3g00100 484 SUPERFAMILY RNI-like 252 455 - -
Rops3g00100 484 SUPERFAMILY F-box domain 65 121 IPR036047 GO:0005515
Rops3g00100 484 Gene3D Ribonuclease Inhibitor 360 468 IPR032675 -
Rops3g00100 484 Gene3D Ribonuclease Inhibitor 201 357 IPR032675 -
Rops3g00100 484 SUPERFAMILY RNI-like 113 248 - -
Rops3g00100 484 PANTHER UNCHARACTERIZED 71 443 - -
Rops3g00100 484 FunFam F-box protein 333 467 - -
Rops3g00100 484 Gene3D - 69 105 - -
Rops3g00100 484 MobiDBLite consensus disorder prediction 1 19 - -
Rops3g00100 484 Pfam F-box domain 71 102 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00100 Rops-Chr3 1240639 1242996 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00100 K10268 - gmx:100812193 733.791