Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00080 ATGGGCACCATCAGCCCTGATGTTGAGCATGCTTCACACACTCCCTTGCTGGATCCTCCTTCCCAAGGCCATAGTAGGCCATTAAAGTTGAAGGGTACCCTTGTGATCATTGGCTCAATCATTTTCTTAACTTCATTGGTTGCACTGATCATAAACCAGAGCGATGAGACCTTAGAGAAACAGCAGAACAATCTCATGCCTAGAGGGGTTGCTGAGGGGGTTTCAGCAAAGTCAAACCCATTCCTTTCCGTGAAAGCTTCGTATAATTGGACAAATGCCATGTTGTCTTGGCAAAGAACAGCATTCCATTTTCAACCTGAAAAGAATTGGATGAACGGTAAGCATGGTCCTTTGTTTTACATGGGATGGTATCATATATTTTACCAATACAATCCTGATTCAGCTGTGTGGGGAAACATAACATGGGGCCATGCTGTATCAAGAGACCTGATTCATTGGCTCTACCTTCCCATTGGCTTCTTTCCAGATCAATGGTATGATATCAATGGTGTATGGTCAGGATCCGCTACCCTTTTGCCAGATGGAAAAATTGTAATGCTCTATACTGGTGATACTGATCAACATGTGCAAGTCCAAAATCTTGCGTACCCCGCCAACCTATCTGATCCCCTCCTCGTTGACTGGGTCAAATATGCTAACAACCCTGTGTTGGTGCCTCCACCAGGCATTGGTTCAAAGGATTTTCGTGACCCCACCACTGCGTGGATTGGGCCAGATAAGAAATGGAGGATCGCTATTGGTTCAAAGGTCAACAAGACTGGTCTTTCGTTGGTTTATACAACCAAGAATTTCATCAATTTTAAGCTCAATGATCACTATTTGCATGCTGTCCCGGGTACGGGTATGTGGGAGTGTGTGGACTTTTTCCCGGTTTCAATAAACGGGTCTTATGGGTTGGACACATCGGTGTCTGGCCCAGCAGTGAAACATGTGTTAAAGGCTAGTTTGGATAACACAAAGGTGGATCATTATGCAACTGGGACCTACTTCATTGAAAATGATACATGGGTGCCCGATAACCCGTATGCTGATGTGGGTATTGGGTTGAGGTTGGACTATGGGAGTTACTATGCGTCCAAGTCATTTTATGACCCACACAAACGGAGAAGGGTCCTGTGGGGATGGATTAATGAATCAGATAGTGAAAGTGCTGACTTGAGAAAGGGTTGGGCGTCTCTTCAGACTATTCCAAGAACAGTTTTGTTTGACAAGAAGACCGGAACTAATGTACTTCAGTGGCCAGTAGAAGAAATCGAGAGCTTAAGACTAAGCAGTGCTGAATTTGAAGGAGTTGTGGTTAAACCTGGTTCAGTTGTGCCACTGGACATAGGCCCGGCAACACAGTTGGACATATTTGCTGAATTTGAAATCGAATTGCTGGCATCCGAAGGGATTGGTAAGGACAAAGAAGGATGTGGTGGAGGAGCTGCTGAAAGAAGTGCTTTGGGACCATTCGGCATTCTGGCTATTGCAGATGACCAACTTTCTGAATTAACACCAGTTTATTTCCGTCTTTCTGGTACTGGCAAGGACAGTTCAACCACTTCCTTCTGTGTTGATAAAACTAGGTCATCAAAGGCTCCTGATGTTTCAAAGCTCGTTTACGGAGGCGAAGTTCCAGTCCTAAGTGATGAAAAACTCTCAGCAAGAGTATTGGTTGACCATTCAATCATTGAGAGCTTTGCTCAAGGAGGGAGAACTGTGATCTCATCTAGAGTTTATCCAACAGAAGCAATATATGGAGCAGCAAGACTATTTCTGTTTAACAATGCAACGGGCATAAACATCAAGGCCTCACTCAAGATTTGGCAATTGAACTCGGCTTTTATACGCCCCTTTCCCTTTGATCAGAGTCAATGA 1881 0.4444 MGTISPDVEHASHTPLLDPPSQGHSRPLKLKGTLVIIGSIIFLTSLVALIINQSDETLEKQQNNLMPRGVAEGVSAKSNPFLSVKASYNWTNAMLSWQRTAFHFQPEKNWMNGKHGPLFYMGWYHIFYQYNPDSAVWGNITWGHAVSRDLIHWLYLPIGFFPDQWYDINGVWSGSATLLPDGKIVMLYTGDTDQHVQVQNLAYPANLSDPLLVDWVKYANNPVLVPPPGIGSKDFRDPTTAWIGPDKKWRIAIGSKVNKTGLSLVYTTKNFINFKLNDHYLHAVPGTGMWECVDFFPVSINGSYGLDTSVSGPAVKHVLKASLDNTKVDHYATGTYFIENDTWVPDNPYADVGIGLRLDYGSYYASKSFYDPHKRRRVLWGWINESDSESADLRKGWASLQTIPRTVLFDKKTGTNVLQWPVEEIESLRLSSAEFEGVVVKPGSVVPLDIGPATQLDIFAEFEIELLASEGIGKDKEGCGGGAAERSALGPFGILAIADDQLSELTPVYFRLSGTGKDSSTTSFCVDKTRSSKAPDVSKLVYGGEVPVLSDEKLSARVLVDHSIIESFAQGGRTVISSRVYPTEAIYGAARLFLFNNATGINIKASLKIWQLNSAFIRPFPFDQSQ* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00080 626 Pfam Glycosyl hydrolases family 32 C terminal 424 611 IPR013189 -
Rops3g00080 626 Gene3D - 434 612 - -
Rops3g00080 626 CDD GH32_Fruct1-like 109 408 - -
Rops3g00080 626 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 107 433 - -
Rops3g00080 626 SMART glyco_32 103 572 IPR001362 GO:0004553|GO:0005975
Rops3g00080 626 Pfam Glycosyl hydrolases family 32 N-terminal domain 103 421 IPR013148 -
Rops3g00080 626 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 89 615 - -
Rops3g00080 626 Gene3D Glycosyl hydrolase domain; family 43 107 433 IPR023296 -
Rops3g00080 626 SUPERFAMILY Concanavalin A-like lectins/glucanases 421 616 IPR013320 -
Rops3g00080 626 SUPERFAMILY Arabinanase/levansucrase/invertase 96 422 IPR023296 -
Rops3g00080 626 MobiDBLite consensus disorder prediction 1 24 - -
Rops3g00080 626 Pfam Beta-fructofuranosidase, N-terminal domain 18 95 IPR021792 GO:0004564
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00080 Rops-Chr3 1002691 1003041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00080 12 620 Glycoside Hydrolase AT1G12240 58.425 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00080 K01193 - gmx:100814788 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00080 3 1002691 1003041 Rops3g00080 3 1002691 1003041 ECH