Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00074 ATGGACACCCCTAGAACTGCCTATGCTGTCAGCAGGGAGCACCCTGGCTCCGAAGTTTCAGCAGAGATAGCAGCAGCACTTGCAGCTTCTTCCATTGTATATAGGAAATATCATCTTGGTTATTCTACAAGGCTTCTCCAAAGGGCTAAAATGGTTTTTGACTTTGCAAATAAGTACAGAGGGTCATACAATGATAGCCTCGGACCGTGGGTATGCCCATTCTATTGTGATTATAGTGGCTACATGGACGAATTGGTCTGGGGAGCAGCATGGTTACTCAAGGCTACTAAGCTTCCTTATTACTGGAATTACATTGAAGACAACATTCACAATCTGAAAAACTTTGGAGAATTTGGATGGGACTCGAAGGATGCTGGCATCAACGTGCTCGTTTCCAAGCTTCTCATTAATAGTCCCTCTTCTAAGCCTTTCACCCTCAATGCCGACAAGTTTGTCTGTGCTGTACTACCTGAATCACCTTCAGTATCAGTCTCATACTCTCCAGGTGGGCTTCTAGTAAAGCCTGGCGGGAGTAACTTGCAGCATGCAACAGCATTCTCATTTCTTTTTCTGGTTTATGCTGGCTATTTGAATAAAGCACATAAAGAGATCAACTGCGGCGGTAACGTTTTTGCTTCTGCAAGGCGACTTAAACAAGTAGCAAGAGGCCAGGTGGACTACATACTTGGAAGCAACCCATTGAATATGTCATACATGGTAGGATATGGACCAAAATTCCCTGAAAGAATACATCACCGTGCGTCGTCATTGCCTTCCTTAGTTCAGCAGCCTGGTCACATCGATTGCAAAGGAGGATCCTCTTATTTTGAAAGCCAAAACCCAAACCCCAATTTGCTTTTAGGAGCTGTTGTGGGAGGACCTGATATCATGGATTCATACACTGATTCTCGAGCAGATTTTGTACACTCAGAACCTACAACATACATCAATGCACCTCTTGTGGGTGTTTTGGCTTACTTCAAAGCACATCCATCTTAA 999 0.4404 MDTPRTAYAVSREHPGSEVSAEIAAALAASSIVYRKYHLGYSTRLLQRAKMVFDFANKYRGSYNDSLGPWVCPFYCDYSGYMDELVWGAAWLLKATKLPYYWNYIEDNIHNLKNFGEFGWDSKDAGINVLVSKLLINSPSSKPFTLNADKFVCAVLPESPSVSVSYSPGGLLVKPGGSNLQHATAFSFLFLVYAGYLNKAHKEINCGGNVFASARRLKQVARGQVDYILGSNPLNMSYMVGYGPKFPERIHHRASSLPSLVQQPGHIDCKGGSSYFESQNPNPNLLLGAVVGGPDIMDSYTDSRADFVHSEPTTYINAPLVGVLAYFKAHPS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00074 332 Gene3D - 1 331 IPR012341 GO:0005975
Rops3g00074 332 Pfam Glycosyl hydrolase family 9 2 324 IPR001701 GO:0004553|GO:0005975
Rops3g00074 332 SUPERFAMILY Six-hairpin glycosidases 1 329 IPR008928 GO:0005975
Rops3g00074 332 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 300 318 IPR033126 -
Rops3g00074 332 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 227 253 IPR018221 -
Rops3g00074 332 PANTHER ENDO-1,4-BETA-GLUCANASE 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00074 Rops-Chr3 929314 932204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00074 1 332 Glycoside Hydrolase AT1G70710 57.864 4.13e-128 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00074 K01179 - gmx:100775752 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00074 3 929314 932204 Rops3g00074 3 929314 932204 ECH