Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00033 ATGACAGACAATCATTCAAACCCTACCCCTGCTGCTCCACCGCCGCAGGAAGAGCTGCCTCCGCCGCTGCTTGCTGAGAAGGAAGAGCTGCCTCCGCCGCCGGTTGCTGAGAAGGAAGAGCTGCCTCCGCCACCGGTTGCTGAGAAGGAAGAACTGCCTCCTCCGCCGCTTGACGAGAAGGAAGAGCTGCCTCCGCCGCCAGTTGCTGAGAAGGAAGAGCTGCCTCCTCCGCCGGTTGCTGAGAAGGAAGAACTGCCTCCGCCTCCGCCTCCGCCGGTAGCAGAGTCAGAGGATGTGGTCGTGGTTGAACGCGAAGAGGTAGAGCAGCACAAGATTGCGCAGAATTTGGTGTCTTTCAAGGAGGAAAGCAATAGGGTTTGCGATCTCTCAGATTCAGAGAGAAAGGCACTTGAAGAGCTGAAGCAGCTGCTCCAATCTGAGGGAGAGGGAAAAGAAGAGGTTTCCATCTGGGGAGTTCCTCTGTTCAAGGATGACAGAACTGACGTCATCCTTCTCAAGTTCCTCAGAGCCAGAGAGTTCAAAGTGAGGGATTCATTTGACATGTTTAACAACACTCTCCGTTGGAGGAAAGAGTTCAACATCGAGGGTCTTTTGGATGAAGATCTGGGTGATGATTTGGAGAAGGTGGTGTTCACGCATGGTCATTCCAGAGAGGGGCATCCCGTCTGTTACAATGTGTATGGAGAGTTCCAGAACAAGGACCTTTATCACAAGACTTTCTCAAATGAGGAAAGAAGAACCCTCTTTCTCAGATGGAGGATTCAGTTCTTGGAGAGGAGTATTAGGAACCTTGACTTCACTCCTGGCGGCATCAACACCATTTTCCAAGTCAATGACCTTAAAAACTCTCCTGGCCCTGCTAAAAGGGAGCTTCGCCTTGCCACTAAACAAGCTTTGCAATTGCTTCAGGACAATTATCCCGAGTTTGTTGCCAAACAGGTTTTTATCAATGTCCCATGGTGGTATCTGGCATTCTATACCATGATCAACCCCTTCTTGACTCAGAGGACAAGGAGCAAATTTGTGTTTGCAGGCCCATCCAAGTCTCCAGATACACTTTTCAAGTATATTTCTCCTGAGCAAGTGCCAGTTCAGTATGGTGGCCTAAGTGTCGATTTTTGTGACTGCAACCCAGACTTCAGTATGTCTGATCCTATCACGGAAATTCCCTTAAAGCCTACCACAAAGCAAATTGTGGAAATCGCTATTTATGAGAAATGCATTATTGTCTGGGAGCTGCGTGTAGTGGGTTGGGAGGTTAGCTATAGTGCTGAATTCAAGCCGGATGCTATAGATGGATATACAGTTAATATACAGAAGGCTACAAAGATGTCCCCGAGTGATGAACCAGTGGTTTCGAATAGCTTCAAAGTTGGTGAACTGGGCAAATTATTGCTCACTGTTGACAATCCCACCCAGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCAACTGTGATTGA 1491 0.4836 MTDNHSNPTPAAPPPQEELPPPLLAEKEELPPPPVAEKEELPPPPVAEKEELPPPPLDEKEELPPPPVAEKEELPPPPVAEKEELPPPPPPPVAESEDVVVVEREEVEQHKIAQNLVSFKEESNRVCDLSDSERKALEELKQLLQSEGEGKEEVSIWGVPLFKDDRTDVILLKFLRAREFKVRDSFDMFNNTLRWRKEFNIEGLLDEDLGDDLEKVVFTHGHSREGHPVCYNVYGEFQNKDLYHKTFSNEERRTLFLRWRIQFLERSIRNLDFTPGGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTRSKFVFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFSMSDPITEIPLKPTTKQIVEIAIYEKCIIVWELRVVGWEVSYSAEFKPDAIDGYTVNIQKATKMSPSDEPVVSNSFKVGELGKLLLTVDNPTQKKKRLLYRFKIKPNCD* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00033 496 ProSiteProfiles GOLD domain profile. 386 491 IPR009038 -
Rops3g00033 496 PANTHER PATELLIN-1 97 493 IPR044834 GO:0008289
Rops3g00033 496 MobiDBLite consensus disorder prediction 69 95 - -
Rops3g00033 496 SUPERFAMILY CRAL/TRIO domain 216 384 IPR036865 -
Rops3g00033 496 SMART CRAL_TRIO_N_2 167 192 IPR011074 -
Rops3g00033 496 MobiDBLite consensus disorder prediction 42 68 - -
Rops3g00033 496 SMART sec14_4 210 378 IPR001251 -
Rops3g00033 496 Pfam CRAL/TRIO, N-terminal domain 136 191 IPR011074 -
Rops3g00033 496 MobiDBLite consensus disorder prediction 1 95 - -
Rops3g00033 496 SUPERFAMILY CRAL/TRIO N-terminal domain 123 208 IPR036273 -
Rops3g00033 496 CDD SEC14 215 376 IPR001251 -
Rops3g00033 496 Gene3D - 122 407 IPR036865 -
Rops3g00033 496 FunFam SEC14 cytosolic factor family protein 125 198 - -
Rops3g00033 496 Pfam CRAL/TRIO domain 216 375 IPR001251 -
Rops3g00033 496 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 206 375 IPR001251 -
Rops3g00033 496 MobiDBLite consensus disorder prediction 8 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00033 Rops-Chr3 551306 553855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00033 171 370 Acyl Lipid Metabolism Gene Families AT1G55840 27.523 2.24e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00033 - - gmx:100804006 653.669