Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00031 ATGGCCGAGGAAGCCCAAAAACCAGCTGAAGAAGTGGTAGTAGCCGCCACTGAAGAGAAACCAGCGGCAGCTGAAGAGAAGCCATCAACCACCGAAGAGAAGGCGGCGTCCGTTGAAGAAGTGGTGGAGGAGGAGAAGCCCCAGAGCGCAGTTGAAGACAAGATTTCTCAATCGGTTTCTTTCAAGGAGGAGACCAACGTGGTTGCCGAGCTCCCCGAAGCTCAGAAGAAGGCCCTTGACGAGCTCAAGCACCTTATTCAAGAGGCCCTTAACAAGCACGAGTTCACTGCTCCCCCACCTTCCAAGGTGACCCCACAAGAAGAAAAGAAGCCTGAAGAAGAAAAGAAGGCTGAAGAAGAAAAGAAAGAAGAGAAGGAGGCTGAAGAAGAAAAGAAGGAAGAGGAGAAAGCTGAAGAAGAAAAGAAGGAAGAGGAGAAAGCTGAAGAAGAGAAACCAGGTCCTACTTCTGAGGAACCTAAAAGTGAAACTCAAGCTGAGGCTGAGGCTGAGGCTGAGGCTCCAAAAGAGAAAGAGACAGAGGCAGAGGCAGAAGAGAAGAAGGTGGACGCAGTGGTTGAGGTGGCGGAGGCAGCTGCTGTAAGTGTGGAGAAGGACGGTGCAACCACTGTGGAAGATATTAAGGAGACCATAGTCTCAGTGTCAGTGGCTGAAGGTGAAGCTGAGGAAGCAGCAACCAAGGAAGCAGAAGCTCCTCCTCCTCCTACTGAGCCAGAGGAAGTTGAGATATGGGGAATTCCCCTACTTGCAGATGAGAGGAGTGACGTGATTCTCCTCAAATTCCTTAGAGCCAGGGATTTCAAGGTCAAAGATGCCTTCACCATGATCAAGAACACCGTGCGCTGGCGAAAGGAATTCGGAATAGATGAACTTGTCAATGAAGATCTTGGAAGTGATTGGGACAAGGTGGTGTTTACTCATGGATATGACAAGGAAGGTCACCAAGTTTGCTACAACGTGTTTGGTGAGTTTGAAGACAAGGACTTGTATAACAAAACTTTCTCTGACGATGAGAAGCGCCTCAAGTTCATCCGGTGGAGGATTCAATTCTTGGAGAAGAGTGTCAGAAAACTTGACTTCTCTCCCACTGCTATCTCTACTATTGTCCAAGTCAATGATCTTAAGAATTCTCCTGGACTTGGCAAGAGAGAGCTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCTGAGTTTGTAGCCAAGCAGATATTTATCAATGTCCCATGGTGGTATCTTGCCTTTTCTAGGATGATCAGTGCTTTTCTGACACAGAGGACCAAGAGCAAATTCGTATTTGCTGGTCCCTCCAAATCTGCTGAAACCCTTTTCAAATATATAGCTCCTGAGCAAGTGCCAATTCAATATGGGGGACTGAGTAGAGAGGGTGAACAGGAATTCACCAATGCTGACCCTGCTACAGAGGTTACAATTAAACCAGCAACAAAACATACTGTTGAGTTCCCAGTTTCTGAGAAATGCCATTTGGTTTGGGAAGTCCGAGTTGTGGGTTGGGATGTGAGCTATGGAGCTGAATTTGTGCCTAGTGCTGAGGATGGATACACTGTGATAGTGCAGAAGAGTAGGAAAATTGCTCCTGCTGATGAAACAGTGATTGGTAACAGCTTCAAAGTTGGTGAACCAGGCAAGGTTGTACTCACCTTAGATAACCAAACATCCAAGAAGAAGAAGCTCCTGTACAGGTCCAAGACCAAACCCATATCTGAGTAA 1761 0.473 MAEEAQKPAEEVVVAATEEKPAAAEEKPSTTEEKAASVEEVVEEEKPQSAVEDKISQSVSFKEETNVVAELPEAQKKALDELKHLIQEALNKHEFTAPPPSKVTPQEEKKPEEEKKAEEEKKEEKEAEEEKKEEEKAEEEKKEEEKAEEEKPGPTSEEPKSETQAEAEAEAEAPKEKETEAEAEEKKVDAVVEVAEAAAVSVEKDGATTVEDIKETIVSVSVAEGEAEEAATKEAEAPPPPTEPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDELVNEDLGSDWDKVVFTHGYDKEGHQVCYNVFGEFEDKDLYNKTFSDDEKRLKFIRWRIQFLEKSVRKLDFSPTAISTIVQVNDLKNSPGLGKRELRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISAFLTQRTKSKFVFAGPSKSAETLFKYIAPEQVPIQYGGLSREGEQEFTNADPATEVTIKPATKHTVEFPVSEKCHLVWEVRVVGWDVSYGAEFVPSAEDGYTVIVQKSRKIAPADETVIGNSFKVGEPGKVVLTLDNQTSKKKKLLYRSKTKPISE* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00031 586 Gene3D - 232 291 - -
Rops3g00031 586 MobiDBLite consensus disorder prediction 90 188 - -
Rops3g00031 586 Gene3D - 304 473 IPR036865 -
Rops3g00031 586 Coils Coil 166 186 - -
Rops3g00031 586 MobiDBLite consensus disorder prediction 226 245 - -
Rops3g00031 586 SUPERFAMILY CRAL/TRIO domain 309 470 IPR036865 -
Rops3g00031 586 ProSiteProfiles GOLD domain profile. 450 581 IPR009038 -
Rops3g00031 586 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 313 474 IPR001251 -
Rops3g00031 586 CDD SEC14 305 469 IPR001251 -
Rops3g00031 586 MobiDBLite consensus disorder prediction 105 188 - -
Rops3g00031 586 PANTHER PATELLIN-1 123 583 IPR044834 GO:0008289
Rops3g00031 586 Pfam CRAL/TRIO domain 308 468 IPR001251 -
Rops3g00031 586 Pfam CRAL/TRIO, N-terminal domain 245 284 IPR011074 -
Rops3g00031 586 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 484 578 IPR036598 -
Rops3g00031 586 SUPERFAMILY CRAL/TRIO N-terminal domain 58 300 IPR036273 -
Rops3g00031 586 SMART CRAL_TRIO_N_2 260 285 IPR011074 -
Rops3g00031 586 Gene3D GOLD domain 474 582 - -
Rops3g00031 586 Coils Coil 108 151 - -
Rops3g00031 586 MobiDBLite consensus disorder prediction 1 65 - -
Rops3g00031 586 SMART sec14_4 303 471 IPR001251 -
Rops3g00031 586 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00031 Rops-Chr3 539228 542057 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00031 264 448 Acyl Lipid Metabolism Gene Families AT5G47730 26.904 8.70e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00031 K19996 - gmx:100806382 681.019