Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00024 ATGAACAAGCTGGTGGTGGAAGTTCTTGATGCCAGCGACCTCATGCCCAAAGATGGAGAAGGCTCAGCTAGCCCCTTTGTAGAGGTAGACTTTGATGAGCAACAGCAGAGGACTCAAACCAAGCACAAAGACCTCAATCCTTATTGGAATGAAAAGTTGGTCTTCAACATAGATGACCCAAAAGATCTTCCTCACAAGACAATTGAAGTGACTGTGTACAACTACAACGATCCAAAAGCAGGTAACCACAAGAACTTCCTTGGAAGGGTGAGAATTTCAGGTGTTTCTGTCCCTTTTTCTGAGTCTGAGGCCACAGTCAAACGCTACCCACTTGACAAACGTGGTCTATTTTCAAATATTAAGGGAGATATTGCTCTTAGAATTTATGCAGTTCATGATCCTTTTGCTTATGTTGCTCCTCTTCCACAACCACAACCACAACCACAACCAAAGGCAAGTCCTGCTGTTGAACTTGAGGACACTCCCTTGCAAGAAATAAACACCAACATAGTAGATGAGGAAAGCGTGGTTGGTGATGGTGAGAAGAAGAAGAAAAAGAAGAAGAAAGAAAAGGAAGTGAGAACTTTTCACACTATTGGGACCGAGAAAGCTGCTCCTGCTCCAGCTCCAGCTCCTCGTGCGGCACCAACAGTGGAAATGAGGGCTGATTTTGCAAAAGCTGGGCCACCCAATGTAAAGTTAATGCAGATCCCGAGGCAAAACCCAGAATATGGATTGGTGGAGACAAGTCCACCACTGGCAGCTCGTTTGCGCTATAGAGGAGGGAATAAGATATCAAGCACGTATGATATGGTGGAACAGATGCACTACTTGTACGTGAATGTGGTGAAGGCAAGGGATCTTCCAGTGATGGACATCTCAGGTAGCCTTGACCCTTATGTAGAAGTGAAGCTTGGTAACTACAAAGGTGTCACAAAGCACTTGGAGAAGAATCCGAATCCAGTTTGGAAGCAAATCTTTGCCTTCTCAAAGGAGAGGTTGCAATCAAATTTGCTTGAAGTGACTGTGAAGGATAAGGACATTGGTAAAGATGATTTTGTGGGTAGAGTTATGTTTGATCTTACAGAGGTTCCTCTTCGGGCACCCCCAGATAGTCCTTTGGCTCCTCAGTGGTACAGATTGGAGGATAAGAAAGGGATAAAAATACATCATGGGGAAATCATGCTTGCAGTTTGGATGGGAACACAAGCTGATGCGTCCTTCCCGGAGGCATGGCACTCTGATGCTCATAACGTGAGTCACTCAAACCTTGCAAACACGAGATCAAAGGTATATTTCACACCCAAGCTTTACTATCTTAGAGTTCAAGTGATTGAGGCTCAAGATCTTGTCCCTGCCGATAGAGGAAGAGCCCCAGATGCTTCTGTTAGAGTACAACTTGGGAATCAGATGAGATACACAAGGCCCTCTCAAATGAAAACCATTAACCCAATTTGGAATGATGAGCTTATGTTAGTGGCAGCCGAGCCTTTTGAGGATTTTATAATTGTGACTGTTGAGGACAAAGTAGGTCCTGGCAATGTTGACATCTTAGGAAGGGAGATTATATCAGTGAGAAGTGTTCCATCCAGACACGAGACCGGCAAGCCCCCTGATGCTCGTTGGTACAATTTGCACAGGCCTAGTGCGGTTGGTGAGGAAGAAACTGAGAAAAAGAAGGAGAAATTCTCGAGCAAGATTCACCTAAGAATCTGTCTAGAGATGGGGTATCACGTGCTTGATGAGTCCACTCATTTCAGCAGTGATCTTCAGCCATCCTCCAAACATTTGAGGAGGAACAACATTGGTATTCTCGAACTTGGGATACTGAGTGCCCGTAATTTGCTACCTTTGAAGGCCAAGGAAGGTAGGACTACTGATGCATACTGCGTGGCCAAGTATGGCAACAAATGGGTTCGAACAAGAACTCTGCTTGACACACTGTCCCCTCGATGGAATGAGCAGTATACATGGGAAGTTTATGATCCATGTACTGTGATCACAATCGGGGTTTTTGACAATCACCACATCAATGGGAGCAGTGACAATAGAGATCAGAGAATTGGAAAGGTAAGAATCCGGTTATCAACTCTTGAAACTGATAGAGTATATACTCATTATTATCCCCTGCTGGTTCTCCAACCCAATGGGCTGAAGAAGAATGGAGAGCTTCACTTGGCCGTGAGATTCACTTCCACAGCTTGGGTTAACATGGTAGCCCAGTATGGGAGGCCTCTGCTTCCCAAAATGCATTATGTCCAACCCATACCTGTTAGGCACATAGATTGGCTCCGCCACCAGGCTATGCAGATTGTGGCTGCAAGGCTATCAAGAGCTGAGCCACCGCTTAGACGTGAAGCAGTTGAGTATATGCTTGATGTGGATTACCATATGTGGAGTCTGAGGAGAAGCAAAGCCAATTTTTACCGCATAATGTCACTCCTCTCAGGTGTCACAGCTGTGTGTAAATGGTTTGATGACATTTGCACTTGGAGAAACCCAGTGACAACCTGCCTTGTTCACGTCTTGTTCTTGATACTGGTTTGCTACCCAGAATTGATATTGCCCACCATTTTTCTTTACTTGTTTGTAATTGGGATTTGGAATTACCGGCGCAGGCCAAGGGATCCACCCCACATGGATGCTAGGATTTCACAAGCAGAAACTGTCCACCCAGATGAGTTGGATGAGGAATTTGACACTTTTCCAACATCAAAACCTGCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCAGGTCGAGTACAGACCGTGGTTGGAGATTTGGCTACTCAAGGTGAAAGAGCTCAAGCGATACTAGGTTGGAGAGACTCGAGGGCTACAGCTATCTTCATCATCTTCTCACTGATCTGGGCTGTATTCATTTACGTTACTCCTTTTCAATTTGTAGCAATTCTAGTAGGCCTCTACATGCTGCGTCATCCTCGGTTTAGGAGCAGGATGCCATCGGTACCAGTTAATTTCTTCAAGAGATTGCCTTCCAAATCAGATACGCTGCTATGA 3033 0.452 MNKLVVEVLDASDLMPKDGEGSASPFVEVDFDEQQQRTQTKHKDLNPYWNEKLVFNIDDPKDLPHKTIEVTVYNYNDPKAGNHKNFLGRVRISGVSVPFSESEATVKRYPLDKRGLFSNIKGDIALRIYAVHDPFAYVAPLPQPQPQPQPKASPAVELEDTPLQEINTNIVDEESVVGDGEKKKKKKKKEKEVRTFHTIGTEKAAPAPAPAPRAAPTVEMRADFAKAGPPNVKLMQIPRQNPEYGLVETSPPLAARLRYRGGNKISSTYDMVEQMHYLYVNVVKARDLPVMDISGSLDPYVEVKLGNYKGVTKHLEKNPNPVWKQIFAFSKERLQSNLLEVTVKDKDIGKDDFVGRVMFDLTEVPLRAPPDSPLAPQWYRLEDKKGIKIHHGEIMLAVWMGTQADASFPEAWHSDAHNVSHSNLANTRSKVYFTPKLYYLRVQVIEAQDLVPADRGRAPDASVRVQLGNQMRYTRPSQMKTINPIWNDELMLVAAEPFEDFIIVTVEDKVGPGNVDILGREIISVRSVPSRHETGKPPDARWYNLHRPSAVGEEETEKKKEKFSSKIHLRICLEMGYHVLDESTHFSSDLQPSSKHLRRNNIGILELGILSARNLLPLKAKEGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVYDPCTVITIGVFDNHHINGSSDNRDQRIGKVRIRLSTLETDRVYTHYYPLLVLQPNGLKKNGELHLAVRFTSTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFYRIMSLLSGVTAVCKWFDDICTWRNPVTTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRRRPRDPPHMDARISQAETVHPDELDEEFDTFPTSKPADIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAILGWRDSRATAIFIIFSLIWAVFIYVTPFQFVAILVGLYMLRHPRFRSRMPSVPVNFFKRLPSKSDTLL* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00024 1010 Gene3D C2 domain 601 735 IPR035892 -
Rops3g00024 1010 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 3 1010 IPR047259 -
Rops3g00024 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 438 594 IPR035892 -
Rops3g00024 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 416 IPR035892 -
Rops3g00024 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 145 IPR035892 -
Rops3g00024 1010 CDD C2B_MCTP_PRT_plant 277 402 IPR047257 -
Rops3g00024 1010 ProSiteProfiles C2 domain profile. 418 543 IPR000008 -
Rops3g00024 1010 FunFam C2 domain-containing protein 272 417 - -
Rops3g00024 1010 Pfam C2 domain 277 379 IPR000008 -
Rops3g00024 1010 Pfam C2 domain 603 710 IPR000008 -
Rops3g00024 1010 Pfam C2 domain 3 96 IPR000008 -
Rops3g00024 1010 Pfam C2 domain 439 544 IPR000008 -
Rops3g00024 1010 ProSiteProfiles C2 domain profile. 586 708 IPR000008 -
Rops3g00024 1010 ProSiteProfiles C2 domain profile. 1 113 IPR000008 -
Rops3g00024 1010 Gene3D C2 domain 263 400 IPR035892 -
Rops3g00024 1010 Gene3D C2 domain 421 574 IPR035892 -
Rops3g00024 1010 Gene3D C2 domain 1 153 IPR035892 -
Rops3g00024 1010 FunFam C2 domain-containing protein 586 733 - -
Rops3g00024 1010 CDD C2A_MCTP_PRT_plant 3 129 - -
Rops3g00024 1010 Pfam Plant phosphoribosyltransferase C-terminal 855 1010 IPR013583 -
Rops3g00024 1010 CDD C2D_MCTP_PRT_plant 604 727 IPR047255 -
Rops3g00024 1010 CDD C2C_MCTP_PRT_plant 439 592 IPR047258 -
Rops3g00024 1010 ProSiteProfiles C2 domain profile. 259 379 IPR000008 -
Rops3g00024 1010 MobiDBLite consensus disorder prediction 175 194 - -
Rops3g00024 1010 SMART C2_3c 277 373 IPR000008 -
Rops3g00024 1010 SMART C2_3c 3 111 IPR000008 -
Rops3g00024 1010 SMART C2_3c 439 537 IPR000008 -
Rops3g00024 1010 SMART C2_3c 604 707 IPR000008 -
Rops3g00024 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 603 736 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00024 Rops-Chr3 426332 429731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00024 1 1010 Lipid Metabolism Gene Families AT1G22610 73.521 0.0 1521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00024 - - gmx:100778133 1713.74