Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00023 ATGGAGGACATCGAGGATTTGCTAATTGGAAGCGGAAGTGGAACTCCGCCGGGCTTTCGTTTGCCATTAGCGGCTGTTGGTGTTGGCGTTGGCGTTGGGAAGAAGAGGAATCAACGTTCTTCTTCACTTTCTTCAAATGCAAATGCAAATGCAGTCCCTGGTACTCAGACTATCTACATAAAGACCTTCGGGTGCTCTCATAACCAGAGTGACAGTGAATACATGGCTGGTCAGCTTTCAGCTTTTGGTTATTCAGTGAGTGATAATCCTGACCAAGCAGATCTATGGCTCATCAACACTTGCACAGTGAAATCCCCTAGTCAATCTGCCATGGATACCATCATAACAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGAGAATTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATCGATCGTGTCGTTGAAGTTGTAGAGGAGACTTTAAAGGGTCACGAAGTGCGACTTTTGACCCGTAAGAAGTTGCCAGCACTTGACCTTCCGAAGGTGAGAAAGAACAAGTTCGTTGAGATTCTTCCAATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGGAGTTACACAATAGATAGCCTAGTTGGGCGTGTAAAATCTGTCATATCTGATGGAGTTAAAGAGATATGGTTGAGCAGTGAAGACACTGGAGCATATGGTCGTGACATTGGAGTCAATCTTCCAACTTTATTGAAGGCCTTAGTAGCAGAACTACCAGCTGATGCAAGCACTATGCTGCGTATTGGAATGACCAATCCTCCTTTTATCCTTGAGCACCTGAAAGAGATAGCAGAGTTTTTGCGGCATCCATGTGTTTACTCTTTTTTGCATGTACCAGTTCAGTCTGGAAGTGATGCTATTTTGAGTGCAATGAATCGGGAATATACTGTGAGTGAGTTCAGGACCGTTGTAGATACCTTAACTGAGCTTGTACCGGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGCACAAACTGTCAACCTTATCAAAGACTACAAGTTCCCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCTAGGATGAAAAAGGTTCCAAGTGATCTGGTGAAGAGAAGAAGCCGTGAACTGACAAATGTCTTTGAAGCCTTCACACCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTTCACTTGGTTGGTCACACGAAGGGATACATACAAGTTCTTGTGACTGCTCCAGACAATATGCTGGGAACTTCAGCTATGGTTAAGATAACATCCGTGGGAAGGTGGTCAGTTTTTGGGGAAGTAATTGAGACGGTCAACCCTGTATGTGACTATAAAGCTTTAAACAAGCATGTTCCCAATCAGGATATGCCTTCTCAATGCTATAATCCAGCCAAGACTGGTGGATCCTCAGAAGAGCCAGAATCTTGTGCTTGTGGAAATGACAGCTGTTGTGGTCAAAGTACTCTTGAGAAGAGTGATAATTCAAGAGGCACTGTAGTGCCACAGAATCAAAACAATAGAAATTTCATTGGATGGATACTGAGGAAGCGGAAGCATCTGCACAAAAGCGTAGAGGGTGAACTCGCCTCAGGATCTGTTAAAAAGCAAGAAGGGAGCATCAGAAAGTGGGATTTTGTTGATCAGGCTCTTTTGGGTGGAATGTCTATCAGCATCTTGACGATTATTGCTCTACTAGTTGCTCTTACGTTTAGAGTTATTTGGTCCCAGTAA 1863 0.4353 MEDIEDLLIGSGSGTPPGFRLPLAAVGVGVGVGKKRNQRSSSLSSNANANAVPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSVSDNPDQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRELKELEGISIVGVQQIDRVVEVVEETLKGHEVRLLTRKKLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVAELPADASTMLRIGMTNPPFILEHLKEIAEFLRHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFAQTVNLIKDYKFPQVHISQFYPRPGTPAARMKKVPSDLVKRRSRELTNVFEAFTPYSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVTAPDNMLGTSAMVKITSVGRWSVFGEVIETVNPVCDYKALNKHVPNQDMPSQCYNPAKTGGSSEEPESCACGNDSCCGQSTLEKSDNSRGTVVPQNQNNRNFIGWILRKRKHLHKSVEGELASGSVKKQEGSIRKWDFVDQALLGGMSISILTIIALLVALTFRVIWSQ* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00023 620 CDD Radical_SAM 193 397 - -
Rops3g00023 620 ProSitePatterns Methylthiotransferase radical SAM domain signature. 193 213 IPR020612 GO:0051539
Rops3g00023 620 Pfam Radical SAM superfamily 196 368 IPR007197 GO:0003824|GO:0051536
Rops3g00023 620 PANTHER RADICAL SAM PROTEINS 1 616 - -
Rops3g00023 620 ProSiteProfiles TRAM domain profile. 418 480 IPR002792 -
Rops3g00023 620 Gene3D - 57 177 IPR038135 -
Rops3g00023 620 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase 57 176 - -
Rops3g00023 620 Gene3D tm_1862 like domain 187 417 IPR023404 -
Rops3g00023 620 SFLD B12-binding domain containing 136 403 - -
Rops3g00023 620 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 56 164 IPR013848 GO:0035596|GO:0051539
Rops3g00023 620 SMART MiaB 189 413 IPR006638 GO:0003824|GO:0051536
Rops3g00023 620 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 189 419 - -
Rops3g00023 620 NCBIfam tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 58 479 IPR006466 GO:0035598|GO:0035600
Rops3g00023 620 SFLD Radical SAM 136 403 IPR007197 GO:0003824|GO:0051536
Rops3g00023 620 Pfam Uncharacterized protein family UPF0004 58 136 IPR013848 GO:0035596|GO:0051539
Rops3g00023 620 ProSiteProfiles Radical SAM core domain profile. 185 418 IPR007197 GO:0003824|GO:0051536
Rops3g00023 620 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 57 474 IPR005839 GO:0006400|GO:0016740|GO:0051539
Rops3g00023 620 SUPERFAMILY Radical SAM enzymes 177 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00023 Rops-Chr3 414150 426141 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00023 K15865 - gmx:100798865 1069.68