LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g04977	ATGTGTCCTTCTGGCCGCACTCTCCGCCCTAATGCCACATCGGATTTCCGACCGGCATTCGACATTCTCGACACAGATTCCGATGGAAAAATCAGCCGCGACGACCTCCGCGCTTTCTACGGCGGAGTTTACGGTGGAGTCTCCGGTGGAGACGACGTAATTGGGGCTATGATGACGGTGGCGGACACCAACAAGGACGGGTTCGTGGAGTACGATGAGTTCGAGCGCGTGGTTAATGGGAACGGTCAGAAAAAACCGTTAGGGTGTGGGGCCATGGAAGATGTGTTCAGGGTTATGGACAAGGACGGTGACGGTAAACTTAGTCACCAGGACTTGAAGAGTTACATGTCTTTGGCTGGTTTCGACGCCACCGATGAAGACATCAAAGCTATGATCAAATTCGGCGGCGGAGATCAAAACGGCGGCGTTAGCTTTGAGGGTTTGCTTCGTATATTAGCTCTTGATTATTCCTATGTTAACTAA	483	0.5155	MCPSGRTLRPNATSDFRPAFDILDTDSDGKISRDDLRAFYGGVYGGVSGGDDVIGAMMTVADTNKDGFVEYDEFERVVNGNGQKKPLGCGAMEDVFRVMDKDGDGKLSHQDLKSYMSLAGFDATDEDIKAMIKFGGGDQNGGVSFEGLLRILALDYSYVN*	161

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g04977	160	CDD	EFh	15	74	IPR002048	GO:0005509
	Rops2g04977	160	CDD	EFh	93	153	IPR002048	GO:0005509
	Rops2g04977	160	ProSitePatterns	EF-hand calcium-binding domain.	24	36	IPR018247	-
	Rops2g04977	160	FunFam	Calcium-binding protein CP1	9	78	-	-
	Rops2g04977	160	ProSiteProfiles	EF-hand calcium-binding domain profile.	11	46	IPR002048	GO:0005509
	Rops2g04977	160	ProSitePatterns	EF-hand calcium-binding domain.	100	112	IPR018247	-
	Rops2g04977	160	Gene3D	-	88	153	-	-
	Rops2g04977	160	ProSiteProfiles	EF-hand calcium-binding domain profile.	49	84	IPR002048	GO:0005509
	Rops2g04977	160	Gene3D	-	4	86	-	-
	Rops2g04977	160	Pfam	EF hand	93	117	IPR002048	GO:0005509
	Rops2g04977	160	PANTHER	CALCIUM BINDING PROTEIN	92	150	-	-
	Rops2g04977	160	SMART	efh_1	15	43	IPR002048	GO:0005509
	Rops2g04977	160	SMART	efh_1	91	119	IPR002048	GO:0005509
	Rops2g04977	160	SMART	efh_1	127	155	IPR002048	GO:0005509
	Rops2g04977	160	SMART	efh_1	53	81	IPR002048	GO:0005509
	Rops2g04977	160	ProSiteProfiles	EF-hand calcium-binding domain profile.	92	122	IPR002048	GO:0005509
	Rops2g04977	160	ProSitePatterns	EF-hand calcium-binding domain.	62	74	IPR018247	-
	Rops2g04977	160	Pfam	EF-hand domain pair	16	77	IPR002048	GO:0005509
	Rops2g04977	160	SUPERFAMILY	EF-hand	8	154	IPR011992	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g04977	1	152	EF-hand Containing Proteins	AT5G49480	57.407	1.40e-56	173

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g04977	K02183		-	gmx:100527230	242.662

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g04977	2	89521399	89522065	Rops2g04977	2	89521399	89522065	ECH