Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04941 ATGACGATCGACTTAGATTCGATCACTCGCAAAGTCGAGGTTGATAATCGCATTCCTCTACGTTACTACTATCGAATTGTCGATAACCTACTCAAACAGGCAACAATCTACCGGGAGGAGAATAATATAGTTGACTTGTATATCATGCTCCTTAGATTTATAAGTTTGGTTTCTGAAACGATACCATATCATCGAGATTATCAAGCTTTACTCCCTAATGAAAGAGCAGCATTTAAGAAGAGATCGCGCATCGTATTGGATGAGCTTGAGTCTTTGAAGCCTGAGTTTAAACGCCGGTTGGAAGAATTAAATGAATCGCATGTGAAAGCTCCATTGCCTGAAGGAAATGGCTTCGAAATGGCTTTGCAGAGTTCAGTGAATTCATCTTTAGAATGGCCGGCTGTCAATAAAAGTTATAACTCGAGCATGGATTTTAAACAGCCTGCTGGATTGGGTTCACACTCTTCATGGAAATATAATAATATGTTATCTACAAATTCCATGCCTATTGACAAGCAATTTCAGAAATTATCTCTTGGTCTACCTCCTCCAAAGAAGGAGACCTTGTCCAGACACTCATTTTTAGGACCAAATGGTCTTCGGGGCCAATGGCTTGGACCTAGAGCAGAAATAAAGGTTCAATATCCAAGCAGCAGTGATCTCACAAATGCCCAGGATTCAAGCCTGAATCAGGCTGGGCAATATGATCTTGTGGGCATTAAAGATGATGGTTACCCAGTTACATCCACAATGGACTCGGTTCTCTCATTGGATGATGGAAGATGGTCGCGTCCTACTGTTGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGAGAGGACCCCTTACAGTTGATCAAGCAACCTTTACCTCCTCCTGTTCTTGCTCAGGTGTACCCAGAATGTGCCCCTATTCCCCCCTCAAAAGTTGCAGATCCAAGGCCTGGACCAGCAAAATCTTCTCATGATTCTGGACCTGGTCCCACAACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTGGCTTCAGAAAACACACGGAAGAACTTAGAGACTTGTGGTGTTCTTGCTGGGTCTCTGAAAAACAGGGTTTTCCATATCACGTCACTTATAATCCCAAAGCAGGAGTCAACTTCAGACTCGAGTGTCTCTGGTACGGTGGTGTACATGAGGAATGGTAGAAAGGAAGTGGATCAATCCACAGCTACAGTAAGGGTAGGATGGGGGATATTCAAGCTAATGACCTGCAGCATAACAGACTGTATGCATGGCAGTGGAAAATGGATGAGAAGGCGAATTCGATTGGGGATAAATGTGAAGAGAAGGGATGGTAGAAGTTGCTCATTAGAATTAGGAGATTCAAAGGATTGTAATTTTCTCATGTGTCAAACATTGAATGAAGAAGAAATATTTGAAGTTCAAGACAACTTGTCACTTTTTCCTTTAGGTTGGATACATACACACCCATCACAGACTTGTTTCATGTCATCTGTGGATCTGCACACACATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACAACAAGTCCACATGGCATATTTCATCTGTCTGATCCAGGTGGTGTGTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAGGAGCCTTCAGATGGAAGTCAAATATATGAGCACTGTTCTCATGTCTATATGAATGCTAACTTGAAGTTCGAAGTTGTTGACCTGAGAGAGAGATGA 1770 0.4209 MTIDLDSITRKVEVDNRIPLRYYYRIVDNLLKQATIYREENNIVDLYIMLLRFISLVSETIPYHRDYQALLPNERAAFKKRSRIVLDELESLKPEFKRRLEELNESHVKAPLPEGNGFEMALQSSVNSSLEWPAVNKSYNSSMDFKQPAGLGSHSSWKYNNMLSTNSMPIDKQFQKLSLGLPPPKKETLSRHSFLGPNGLRGQWLGPRAEIKVQYPSSSDLTNAQDSSLNQAGQYDLVGIKDDGYPVTSTMDSVLSLDDGRWSRPTVESCSPVVTESREDPLQLIKQPLPPPVLAQVYPECAPIPPSKVADPRPGPAKSSHDSGPGPTTYQHLHIPVKMMEDFLRLASENTRKNLETCGVLAGSLKNRVFHITSLIIPKQESTSDSSVSGTVVYMRNGRKEVDQSTATVRVGWGIFKLMTCSITDCMHGSGKWMRRRIRLGINVKRRDGRSCSLELGDSKDCNFLMCQTLNEEEIFEVQDNLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSQIYEHCSHVYMNANLKFEVVDLRER* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04941 589 ProSiteProfiles MPN domain profile. 333 543 IPR037518 -
Rops2g04941 589 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 484 516 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops2g04941 589 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 413 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops2g04941 589 Pfam USP8 dimerisation domain 4 101 IPR015063 -
Rops2g04941 589 Gene3D - 2 113 - -
Rops2g04941 589 PANTHER AMSH-LIKE PROTEASE 3 587 - -
Rops2g04941 589 Coils Coil 86 106 - -
Rops2g04941 589 SUPERFAMILY JAB1/MPN domain 467 543 - -
Rops2g04941 589 MobiDBLite consensus disorder prediction 304 329 - -
Rops2g04941 589 Gene3D Cytidine Deaminase, domain 2 317 589 - -
Rops2g04941 589 FunFam AMSH-like ubiquitin thioesterase 3 1 115 - -
Rops2g04941 589 CDD MPN_AMSH_like 330 587 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04941 Rops-Chr2 88893957 88900968 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04941 K11866 - gmx:100812784 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04941 2 88893957 88900968 Rops2g04941 2 88893957 88900968 ECH