Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g04380 | ATGGCCACAACGTCTCAGAGTGAGATGAAAGACCCACCACAACCACCTTCACGTGGCTTTGTGGACACAGTACAAGAAATCACAATCATCTATAGGTCACTGCCACCTAGACCTTCTATTGAAGAAGTGGAAGCTGCCAAGTCTACCGTGGATTTTGTGAACAACATGGAGCAAACCAAACTCAACGAAATCTCAATGCAAGAACCCCCCCACGATGTCCCCGAGGACCTTTTCTCTGTTCTTCAAGAACTCAAGAAGACCATGGTTTTGTTTCAGAGCCATCAACAGAGGAGAGAGGCCCTCCACCTTCTTCAGCTCGAAAAGACGTTTCAGACCTTTGGTGATCTCATTCAGAGAGCTTCTGAATTGGTTTCTGGCACTGGGGATACCCAGAACCAGAAACTTCCCACTCTAACTGAAACCCTTGACAAAATTGCAACACAAGTTGTGATCACTGATGAAACTTTGGTGAAGAAGAAGAAGAAGGAAGATGAAGAACCACAGAAGAGTGATTTCAAAGCTGAAAAGGGTTCTTCTGTGCACAAGTCCTTCTTGTCAGCAGGTGATGGAAGCTCTGATAAATTAAGTCTCATGAAAGTGGCTACTCTTATTGAAAATTGTGCTACTAGTGGAGCTACAATCCTTGAGCTCAGAGGGAAGTTAATGGATCAGATGGAGTGGTTGCCTGTGTCAATTGGGAAATTATCTGATGTCACTGAAATGGACCTATCTGAAAACAGAATCATGGCTCTTCCAACAACCATTGGGGGTCTCAAGGCCTTAACAAAGCTTGATCTTCACTCAAACCAAATTATAAACCTTCCCCATTCATTTGGTGAATTGGTAAACCTTATCCATCTTGACCTCCACGCCAACAGATTGAGATCACTTCCTGCTACTTTTGGAAACTTGACAAATCTCATTGATCTTGACTTGAGTTCAAATGAGTTCACTCAATTACCAGAGACAATTGGGAATTTAAGCAGCTTGAAGAGATTAAATGTTGAGACAAACGAGCTTGAGGAACTGCCTTATACAATTGGAAATTGTTCATCACTAGTTGAGCTGAAGTTAGATTTCAATCAGCTCAAGGGCCTTCCTGAGGCAATTGGGAAGCTTGAATGCTTGGAGATTCTCACTTTGCACTATAATAGAATCAAGAGGTTGCCTTCAACAGTGGGTAATCTATGCAATTTGAAGGAACTTGATGTTAGTTTTAATGAACTTGAATTTGTAGAGAACCTGAGTTTGGCAGTTAATTTGAAGAAATTAAACTTGGGAAATAACTTTGCAGACCTAAGAGCCTTGCCTAGATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAGATCTTTGCCAGAGTCTTTTAGGTTCTTGTCCAAATTGAGAGTTTTTCGGGCTGATGAGACCCCTCTCGGGGTGCCCCCAAGAGAAGTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCAGTATATGGCTGATTTAGTCACCGAGAGAGATGCAAAACTCATGCCATCAAAGAAGATAAAGAAGGGATTTTGGTTCTGGTTTTGCTCCTTATGTTGCCCTCAGCGTAAATGA | 1599 | 0.4209 | MATTSQSEMKDPPQPPSRGFVDTVQEITIIYRSLPPRPSIEEVEAAKSTVDFVNNMEQTKLNEISMQEPPHDVPEDLFSVLQELKKTMVLFQSHQQRREALHLLQLEKTFQTFGDLIQRASELVSGTGDTQNQKLPTLTETLDKIATQVVITDETLVKKKKKEDEEPQKSDFKAEKGSSVHKSFLSAGDGSSDKLSLMKVATLIENCATSGATILELRGKLMDQMEWLPVSIGKLSDVTEMDLSENRIMALPTTIGGLKALTKLDLHSNQIINLPHSFGELVNLIHLDLHANRLRSLPATFGNLTNLIDLDLSSNEFTQLPETIGNLSSLKRLNVETNELEELPYTIGNCSSLVELKLDFNQLKGLPEAIGKLECLEILTLHYNRIKRLPSTVGNLCNLKELDVSFNELEFVENLSLAVNLKKLNLGNNFADLRALPRSIGNLEMLEELDISDDQIRSLPESFRFLSKLRVFRADETPLGVPPREVVKLGAQEVVQYMADLVTERDAKLMPSKKIKKGFWFWFCSLCCPQRK* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 396 | 419 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 443 | 465 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 373 | 395 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 258 | 280 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 304 | 326 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 235 | 257 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 351 | 372 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 281 | 303 | IPR003591 | - | |
| Rops2g04380 | 532 | SMART | LRR_typ_2 | 327 | 350 | IPR003591 | - | |
| Rops2g04380 | 532 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 443 | 462 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 418 | 439 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 304 | 323 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 281 | 300 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 373 | 392 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 350 | 369 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 258 | 277 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_bac_2 | 327 | 346 | - | - | |
| Rops2g04380 | 532 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING | 310 | 486 | - | - | |
| Rops2g04380 | 532 | Pfam | Leucine rich repeat | 352 | 409 | IPR001611 | GO:0005515 | |
| Rops2g04380 | 532 | Pfam | Leucine rich repeat | 287 | 340 | IPR001611 | GO:0005515 | |
| Rops2g04380 | 532 | SMART | LRR_sd22_2 | 258 | 276 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_sd22_2 | 396 | 417 | - | - | |
| Rops2g04380 | 532 | SMART | LRR_sd22_2 | 304 | 329 | - | - | |
| Rops2g04380 | 532 | Gene3D | Ribonuclease Inhibitor | 410 | 501 | IPR032675 | - | |
| Rops2g04380 | 532 | Gene3D | Ribonuclease Inhibitor | 143 | 407 | IPR032675 | - | |
| Rops2g04380 | 532 | ProSiteProfiles | Leucine-rich repeat profile. | 398 | 419 | IPR001611 | GO:0005515 | |
| Rops2g04380 | 532 | FunFam | Plant intracellular Ras-group-related LRR protein 4 | 194 | 501 | - | - | |
| Rops2g04380 | 532 | SUPERFAMILY | L domain-like | 204 | 475 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops2g04380 | Rops-Chr2 | 79838154 | 79840354 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops2g04380 | 231 | 457 | Receptor kinase-like Gene Family | AT3G11080 | 35.593 | 5.98e-26 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops2g04380 | - | - | lja:Lj0g3v0066329.1 | 813.142 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops2g04380 | 2 | 79838154 | 79840354 | Rops2g04380 | 2 | 79838154 | 79840354 | ECH |