Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04116 ATGAGAGAGATGGTGGTAGGAGAAGGAGAGGCACTAGTGGTTTGCAGTGATAAGAGCATGAAAATTGGGGTGACGATATGGGACATGGATAAGGGAGAAAACCTGCTTCACATACCAAGCTGTGCTTCACCACCTTTCGGATTGTTATGCTTAAGGAACCGGTTCCTCGTGGCATCGCAAATAAACAAACACGGGTCTGTAGGTGGCGGAGCCATTGTTGTCTGGTCCTTGAACAAGCCTCAACAACCACTTCTGAATTACACAGTGGAGGCCATTGGGCCGCTTTCTTGCACAAAAGACGGTACATACCTTGTGGGAGGAGCTTTGTCTGGAAATGCTTATCTATGGGATGTGACCAGTGGAAAATTGCTGAAGACTTGGAGTGCTCATAATAAATCTATAAACTGCATGCTATTTTCAGATGACAATTCTCTTCTTATTTCTGGATCAGATGATGGTATGATCTGTGTTTGGTCCATGATTAGTTTGTTAGATGTGGAAGAAAGGGGAATCTCGCCTTCTTTGTTACATTGTTTGTCAGGGCACATGTCATCCATAACAGGTCTTCTAACTACACCCTGCAGTTACTTTTCAATTTTGATATCAAGCTCCCTTGATGGCACGTGCAAGGTTTGGGACTTTATCAATGGAAGGCTAATGCAAACTCAAATTTATCCTTTGGCAATAACTTCCATTACCCTTCACCAAGGAGAAAAGCTCTTGTTTTGTGGAACAGAAAATGGAACAATAATCGTCACCAAGCTTGATATTGGTCTGGAAGACGGTCCTTCCATTATCACAGTGGGCCAGCCACTTGAATTGAAAGGACACATTGGATCCATAACTACCTTGACCTCAAATCAGGCAGGCCTAATATCTGCCTCTGAAGACTGCACAATCTGCATCTGGGATGCTATCAGTTGGACAATCATTCGAAGATTCAATCTTCAAAAAGGGAAAGTAACTAATCTTGTGGTAGTTCCGCGGTCTTCTGTGCTCTCTACATCAAACCATAGGAGAGTCTCCAATCAGTATATTGTTTCTCCACTTGACAAGTATCCTCAATTGATCAACTCATTCAGGGGAACCACCACTCTCCTTTCCTTATGTCGCCTCTACAAAGAAAAGCAAACTTGCATAGATTTACGAAGTACTGGTTTACTGAGACAGAACATGTCTTGTTCACAGAAAGCAGATATGCCTATGGCCTTGAGCATACAAATGAAAGTGGAAACAAATATAGAGAATCGTATATGGGCAACAAAGATGGCAAAGCATGTCATGGTGATAAACAAACAGCTGCAGTCAAAACTGTTGGACTTAATACGGCGCAGATTGTTTTGTCCAAACAGAAACAACTTTCAAAAATCAAATAGAAAGAAGCCCAAAATTAAGAGCCTTATCCAGGAAGAGGAAAATCAGAAAACTTAG 1431 0.4193 MREMVVGEGEALVVCSDKSMKIGVTIWDMDKGENLLHIPSCASPPFGLLCLRNRFLVASQINKHGSVGGGAIVVWSLNKPQQPLLNYTVEAIGPLSCTKDGTYLVGGALSGNAYLWDVTSGKLLKTWSAHNKSINCMLFSDDNSLLISGSDDGMICVWSMISLLDVEERGISPSLLHCLSGHMSSITGLLTTPCSYFSILISSSLDGTCKVWDFINGRLMQTQIYPLAITSITLHQGEKLLFCGTENGTIIVTKLDIGLEDGPSIITVGQPLELKGHIGSITTLTSNQAGLISASEDCTICIWDAISWTIIRRFNLQKGKVTNLVVVPRSSVLSTSNHRRVSNQYIVSPLDKYPQLINSFRGTTTLLSLCRLYKEKQTCIDLRSTGLLRQNMSCSQKADMPMALSIQMKVETNIENRIWATKMAKHVMVINKQLQSKLLDLIRRRLFCPNRNNFQKSNRKKPKIKSLIQEEENQKT* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04116 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 222 IPR001680 GO:0005515
Rops2g04116 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 160 - -
Rops2g04116 476 MobiDBLite consensus disorder prediction 452 476 - -
Rops2g04116 476 PRINTS G protein beta WD-40 repeat signature 291 305 IPR020472 -
Rops2g04116 476 PRINTS G protein beta WD-40 repeat signature 146 160 IPR020472 -
Rops2g04116 476 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Rops2g04116 476 SMART WD40_4 80 117 IPR001680 GO:0005515
Rops2g04116 476 SMART WD40_4 172 213 IPR001680 GO:0005515
Rops2g04116 476 SMART WD40_4 216 254 IPR001680 GO:0005515
Rops2g04116 476 SMART WD40_4 267 304 IPR001680 GO:0005515
Rops2g04116 476 SMART WD40_4 120 159 IPR001680 GO:0005515
Rops2g04116 476 PANTHER WD-REPEAT PROTEIN 18 4 442 IPR045227 -
Rops2g04116 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 304 IPR001680 GO:0005515
Rops2g04116 476 Pfam WD domain, G-beta repeat 273 304 IPR001680 GO:0005515
Rops2g04116 476 Pfam WD domain, G-beta repeat 175 213 IPR001680 GO:0005515
Rops2g04116 476 Pfam WD domain, G-beta repeat 121 159 IPR001680 GO:0005515
Rops2g04116 476 SUPERFAMILY WD40 repeat-like 22 338 IPR036322 GO:0005515
Rops2g04116 476 Gene3D - 5 224 IPR015943 GO:0005515
Rops2g04116 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 160 IPR001680 GO:0005515
Rops2g04116 476 Gene3D - 225 342 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04116 Rops-Chr2 74843289 74843588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04116 124 335 Miscellaneous Gene Families AT5G08390 22.222 8.98e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04116 K14829 - gmx:102662801 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04116 2 74843289 74843588 Rops2g04116 2 74843289 74843588 ECH