Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04084 ATGAATGGTTCCACCACCCTCCACCATCAATACGAAAATCCTAGCTCCCTCACCTTCAAGCTCAAATGTGTTACTACCCTCAAAACCCTAACACCCCATATCACATGCCTCGCGGTTCACCGTAACCTTCTCTACGCTGCATCTGTCAACCTCATCAACGTCTTTGATCTCTCCCATTACACCCAAGTTGACGCGTTCAACGAAAGTCCCGGGTCAGGGTTTGTTAAGTCCATTGCTTTCAGCGGTTCAAGGGTCTTCACTGCTCACCAAGATTGCAAGATTCGAGTGTGGCTCATCACACCCTCGAAACGACACCGTCTTTTGTCGTCGCTTCCCACCGTGAAGGACCAGTTATGCCGTTGCATAATTCCCAGAAACTACGTCACCGTTCGAAGACACCGGAAGAGTCTCTGGATCCAACATTGTGACACGGTGTCGGGTTTAGCAGTGAACGAGAGGTATATGTACTCTGTGTCGTGGGACAAAAGCTTTAAGATTTGGGACTTGTCGGGTTACCGGTGTTTGGAGTCCGTTAAGGCGCATGAAGATGCTATAAACGCCGTCGTAGTCGCCGATAACGGCACCGTTTACACGGCCTCCGCGGATGGGTGCATCAAGGTCTGGAAGAGGGATGATAAGTTGAAACGGCACACGTTGGTGAGTACCACAGGGAAGCAGAAACCGACCGTTAATGCGCTTGCATTGGATGGCGATGGCACGGCGTTGTTTTCCGGTGGTAGCGACGGCACGATCTGCCGGTGGGAGAGTAAGTGCGAAGAAAACGACGTCGTGTTGGTGGAGACGTTGCGGGGCCATAGTGGGGCCATATTGTGTCTGGTCAACGTGGGTGGTTTGTTGGCGAGTGGGTCAACAGATCTGACGGTTAGGATTTGGCAAGAGGAAAGGGGGTGTAGTGGGTATTGTTGCAAGGCAGTGTTGAAAGGGCACGAGAAACCGATCAAGTCATTGGTGGCATTTTCGGGTGGGGAAGGTGACTCAAACGACGTCGTAACGCTCTTCAGTGGAAGCCTTGACGGGGTTATTAAGGTGTGGGAGGTATTCGGTTCGGTTTGA 1074 0.5177 MNGSTTLHHQYENPSSLTFKLKCVTTLKTLTPHITCLAVHRNLLYAASVNLINVFDLSHYTQVDAFNESPGSGFVKSIAFSGSRVFTAHQDCKIRVWLITPSKRHRLLSSLPTVKDQLCRCIIPRNYVTVRRHRKSLWIQHCDTVSGLAVNERYMYSVSWDKSFKIWDLSGYRCLESVKAHEDAINAVVVADNGTVYTASADGCIKVWKRDDKLKRHTLVSTTGKQKPTVNALALDGDGTALFSGGSDGTICRWESKCEENDVVLVETLRGHSGAILCLVNVGGLLASGSTDLTVRIWQEERGCSGYCCKAVLKGHEKPIKSLVAFSGGEGDSNDVVTLFSGSLDGVIKVWEVFGSV* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04084 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 299 IPR001680 GO:0005515
Rops2g04084 357 Pfam WD domain, G-beta repeat 173 209 IPR001680 GO:0005515
Rops2g04084 357 Pfam WD domain, G-beta repeat 309 351 IPR001680 GO:0005515
Rops2g04084 357 Pfam WD domain, G-beta repeat 266 298 IPR001680 GO:0005515
Rops2g04084 357 Pfam WD domain, G-beta repeat 223 254 IPR001680 GO:0005515
Rops2g04084 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 209 IPR001680 GO:0005515
Rops2g04084 357 SMART WD40_4 132 168 IPR001680 GO:0005515
Rops2g04084 357 SMART WD40_4 171 209 IPR001680 GO:0005515
Rops2g04084 357 SMART WD40_4 306 352 IPR001680 GO:0005515
Rops2g04084 357 SMART WD40_4 59 98 IPR001680 GO:0005515
Rops2g04084 357 SMART WD40_4 212 255 IPR001680 GO:0005515
Rops2g04084 357 SMART WD40_4 262 299 IPR001680 GO:0005515
Rops2g04084 357 SMART WD40_4 20 56 IPR001680 GO:0005515
Rops2g04084 357 Gene3D - 13 125 IPR015943 GO:0005515
Rops2g04084 357 Gene3D - 126 356 IPR015943 GO:0005515
Rops2g04084 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 255 IPR001680 GO:0005515
Rops2g04084 357 FunFam BnaA09g28200D protein 128 213 - -
Rops2g04084 357 SUPERFAMILY WD40 repeat-like 19 354 IPR036322 GO:0005515
Rops2g04084 357 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 14 353 IPR045182 -
Rops2g04084 357 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Rops2g04084 357 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Rops2g04084 357 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Rops2g04084 357 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04084 Rops-Chr2 74334979 74336052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04084 141 353 Acyl Lipid Metabolism Gene Families AT3G18860 28.505 8.28e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04084 - - aprc:113874855 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04084 2 74334979 74336052 Rops2g04084 2 74334979 74336052 ECH