Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04060 ATGGAGTCTGGTCTAGTGATCAAGGTGAAATATGGAGATACCCTCAGGCGCTTTAGTGCTCGTGTGGATGAGAATAATCGGTTGGATCTTAACATGGTTGGGTTGAGGGCGAAGATATGTTCTATTTTCAATTTCAATGCTGATGCAAATTTTATTCTGAGATATGTTGATGAAGATGGTGACTTGGTGACTCTTGTGGATGATGATGATTTGCATGACGTGATGAGGCAGCAATTGAAGTTCTTGAGAATTGATGTACATATGATCAATGACAATGGTAGTAAATCAAATGCAGGGTCTAGTGGAAGTGCCACCCCTTTAAGATCTCCTCCTGTCTCCAACCCATATCTGGGTAGGAATGATGTTGAAGCTGATGTTTTGAATTCTCTGCCAGTGCCATTACGTGAGGCTCTTTATTTTCCACTTTCAAAAGCTGCATCTTCAAGTCCAGTGCTGGCTAGTCTTGCTGATTCAATTTCCAAAATTGGACAATCCATTATAAACTCTCATCACCAGCCTCGTGTTGCCGCTGGTTCAAGCTCAAAAAACAGTGTTCCTGAAGGATCTACCTTTTCTGAAGCAAGAGGTTCACAGTCTCCATTTGTGGAACCGGCTTCCAATGCCAAAGCTGATGTTTCTGTGCCAGACCAAGTACTTGAGGCTCTTTCTAATTTATCGCTTTCAAAAGCTGCATCTTCGAGTCAAGTGCTTGCTAATCTTGCTGATTCAATTTCCAAAATGGGACAATTCACTCTAAATTCTCATTGCCAGCCTAATGTTGCAGCCGGTCCAAGCTTGAAAAATGGTGTTCTTGAAGAACCTATCACTTCTGAAGCTAGAGGGCCACAGTCAGCTTTAAATGCCAGTCAGCAGGTGGAGGCTGGAAATGTAACTAGAGGTGTAGTGGCAGGAGTTGCCCCTGTTGATCTCAATATTCTTCCATGTGATCCCAATTCATCTCAGTCCACAGATATAAATAGGGCACCACTTTCATCACCAATCACTGGTGGCAATGGCAACAAGGGTAAAATGTCTACTGATGATAGTTTTACTGGTAAGGGTAAAAGTTGTGGGTTATCCATGAGTTCTGCAGCTCCTAACAACAGCTCAACCCAGAGCACTGCAATGAGTTATAGTGCTCCCATTGGGTGTCCATTTTCTGGGACATATATTCATTCAGTGCCTCCTCCTCTAGGAAACTATGGAATTCCTCCCTTTAAAAGGAGCCATAGTCACACTGAGGCAATGAGTGGTATGTTCCACAAGGGGGTCCGCTGTGATGGCTGTGGAGTCTATCCAATAACTGGACCTCGATTTAAATCCAATATAAAAGAAAATTATGACCTTTGCAGCATTTGCTTCAACGAAATGGGTAATGAGACTGAATATATCAGAATGGACCGGCCTGCCTCTGTTCGTGCCCCACATTGGCCTAGGATACCACCACATCTTGCTAAAACAGGTGCCATTTTGAAGCATGCTAGGCCAAAGCTAGATAGTCGGTTCATTTTGGATGTTAATGTCATAGATGGTACAATGATGGCTCCGGCTACTGAATTTACAAAGATTTGGCGGATGCGCAACAATGGCACTTTAGTGTGGCCCAAGGGAACTCAACTTGTTTGGATTGGAGGAGACAAATTTAGTGACTCTCATTCAGTTGACTTGGAGGTTCCCGAGGATGGTATACCTGTGGAGAAGGAACTTGACATTGCAGTTGACTTTAGAGCGCCTCAGTTGCCTGGTCGATACATATCATATTGGAGGATGACATCTTCATCCGGACATAAATTTGGCCAACGTGTTTGGGTCCTTATACAGGTTGATGCCTCTCTCAGGGACTCATTTTATGATAGCTCTCAAGGTCTGAACTTGAATATTCCCCTTGATGTCAGTGTCTCGAAAGGGCCTCAGGTTATAGATATCAATGTTCAACCTATTGAAGATGATACTTTTCTTCAACCCCACACTCCTAATGCTCCCACTGAACCCGTGAATGAAATGGTTGATAAGGAACCAAGGCAGGAGCTTGGAAACGAATTCCCTGTAAATGAAGCTACATTTGTTGTCCCTGCTGCCTCAGCCCCTGCAACTTCTGCAGCACCTTCATCCGTTTCTTATCCTATTATTGATTTCTCTGAAACAGCCCCAGCTGTTCCCTCCAATCAGCAAACCCCAGCTGTGGTTGCACCATCATCATCTCTAGGGATTGGTGGAAATAATTCTGTAGAAGAGACTCTCCTTAAAGAGCTTGAAGAGATGGGTTTTGAGCAGGTTGATTTGAACAAAGAGATTTTGAGAATGAATGAGTACAATCTGGAGCAGTCAGTAGATGATCTCTGTGGTGTTTCTGAGTGGGACCCTATGCTTCGAGAGTTACAGGAGATGGGTTTCCGTGACAATGAGACGAATAAGAGGCTGCTGAAGAAAAACAACGGAAGTATCAAACGCGTTGTTATGGATTTAATCAATGGAGAGTAG 2481 0.4365 MESGLVIKVKYGDTLRRFSARVDENNRLDLNMVGLRAKICSIFNFNADANFILRYVDEDGDLVTLVDDDDLHDVMRQQLKFLRIDVHMINDNGSKSNAGSSGSATPLRSPPVSNPYLGRNDVEADVLNSLPVPLREALYFPLSKAASSSPVLASLADSISKIGQSIINSHHQPRVAAGSSSKNSVPEGSTFSEARGSQSPFVEPASNAKADVSVPDQVLEALSNLSLSKAASSSQVLANLADSISKMGQFTLNSHCQPNVAAGPSLKNGVLEEPITSEARGPQSALNASQQVEAGNVTRGVVAGVAPVDLNILPCDPNSSQSTDINRAPLSSPITGGNGNKGKMSTDDSFTGKGKSCGLSMSSAAPNNSSTQSTAMSYSAPIGCPFSGTYIHSVPPPLGNYGIPPFKRSHSHTEAMSGMFHKGVRCDGCGVYPITGPRFKSNIKENYDLCSICFNEMGNETEYIRMDRPASVRAPHWPRIPPHLAKTGAILKHARPKLDSRFILDVNVIDGTMMAPATEFTKIWRMRNNGTLVWPKGTQLVWIGGDKFSDSHSVDLEVPEDGIPVEKELDIAVDFRAPQLPGRYISYWRMTSSSGHKFGQRVWVLIQVDASLRDSFYDSSQGLNLNIPLDVSVSKGPQVIDINVQPIEDDTFLQPHTPNAPTEPVNEMVDKEPRQELGNEFPVNEATFVVPAASAPATSAAPSSVSYPIIDFSETAPAVPSNQQTPAVVAPSSSLGIGGNNSVEETLLKELEEMGFEQVDLNKEILRMNEYNLEQSVDDLCGVSEWDPMLRELQEMGFRDNETNKRLLKKNNGSIKRVVMDLINGE* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04060 826 MobiDBLite consensus disorder prediction 317 352 - -
Rops2g04060 826 SUPERFAMILY CAD & PB1 domains 5 81 - -
Rops2g04060 826 CDD UBA_NBR1 785 823 - -
Rops2g04060 826 Gene3D Immunoglobulins 493 612 IPR013783 -
Rops2g04060 826 Pfam Zinc finger, ZZ type 421 456 IPR000433 GO:0008270
Rops2g04060 826 SUPERFAMILY UBA-like 786 824 IPR009060 GO:0005515
Rops2g04060 826 Gene3D - 2 88 - -
Rops2g04060 826 FunFam protein NBR1 homolog 785 826 - -
Rops2g04060 826 SUPERFAMILY RING/U-box 417 471 - -
Rops2g04060 826 SMART PB1_new 4 89 IPR000270 GO:0005515
Rops2g04060 826 Pfam Ig-like domain from next to BRCA1 gene 507 608 IPR032350 -
Rops2g04060 826 CDD NBR1_like 496 609 IPR032350 -
Rops2g04060 826 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 180 824 - -
Rops2g04060 826 Pfam PB1 domain 7 84 IPR000270 GO:0005515
Rops2g04060 826 ProSiteProfiles Zinc finger ZZ-type profile. 421 471 IPR000433 GO:0008270
Rops2g04060 826 MobiDBLite consensus disorder prediction 93 116 - -
Rops2g04060 826 Gene3D - 784 825 - -
Rops2g04060 826 MobiDBLite consensus disorder prediction 170 204 - -
Rops2g04060 826 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Rops2g04060 826 Gene3D - 413 469 IPR043145 -
Rops2g04060 826 Gene3D - 736 783 - -
Rops2g04060 826 MobiDBLite consensus disorder prediction 170 208 - -
Rops2g04060 826 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 742 780 IPR015940 -
Rops2g04060 826 MobiDBLite consensus disorder prediction 93 110 - -
Rops2g04060 826 SMART zz_5 420 465 IPR000433 GO:0008270
Rops2g04060 826 FunFam next to BRCA1 gene 1 protein-like 493 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04060 Rops-Chr2 74054528 74058681 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04060 K17987 - gmx:100816395 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04060 2 74054528 74058681 Rops2g04060 2 74054528 74058681 ECH