Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04047 ATGGGTATGGAGGAGGAGAGAAGCAATAACATAGAGGGAGGTGCCTCATTACCATCTGGTCCAGACGCAAAGAAGAGAAGGGTCACGTACTTCTACGAACCAAGCATCGGCGATTATTACTATGGTCAAGGTCACCCGATGAAACCCCACCGGATCCGCATGGCCCACAATCTCATTGTTCACTACTCCCTCCACCGTCGGATGGAGATCAACCGTCCTTTTCCGGCTTCCACCGGCGACATCCGCCGTTTCCACTCCGACGAGTACGTCGACTTCCTCTCCTCCGTTTCCCCCGAGACCCTCGCCGAGACCACCTTCTCTCGCCAGCTTAAGCGCTTCAACGTCGGCGAGGACTGTCCCGTTTTTGATGGTTTATTCAATTTCTGCCAGGCCTCCGCCGGCGGCTCCATTGGCGCCGCCGTCAAGCTTAACCGTGGGGACGCTGACATCGCTATCAATTGGGCCGGCGGCTTGCACCATGCTAAGAAGTCCGAAGCTTCTGGATTCTGTTACGTCAACGACATTGTTCTCGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGTGTGCTATACGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACAACTGATAGAGTGATGACAGTGTCTTTTCATAAGTTTGGAGACTTTTTCCCTGGCACTGGACACATCAAAGACATTGGGGTGGGCTCAGGAAAGAATTATGCTGTCAATGTCCCATTAAACGATGGAATGGATGATGAAAATTTCCGTGGTCTGTTTCGACCCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTAATGGTCTTGGGTGGGGGAGGATATACGATTCGGAATGTTGCTCGGTGTTGGTGTTATGAGACAGCAGTAGCCGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTCTTTGTCGACCCAAGCAACATGGAGAACCTAAACACACCCAATGATATGGAAAAAATAAGGAACACATTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACAACACCATCAACCTTACAAGTTCCAGAAGAGGCGGCAGAGGACATGGATAGAAGACCAAAACGTCGCAAATGGAATGGTGAAGATTATGATTCTGATTATGATGAAGATGAAAAGGCTAATTTGAGGTGCTCAAATTTCATTGATCATGTGAGGGGTGTTGCGGATGACATGGAAGAAGAGAAGCCAGAAGTGCATCCATCGTCTTGA 1413 0.4784 MGMEEERSNNIEGGASLPSGPDAKKRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASTGDIRRFHSDEYVDFLSSVSPETLAETTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYAVNVPLNDGMDDENFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLFVDPSNMENLNTPNDMEKIRNTLLEQISRLPHAPSAPFQTTPSTLQVPEEAAEDMDRRPKRRKWNGEDYDSDYDEDEKANLRCSNFIDHVRGVADDMEEEKPEVHPSS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04047 470 Gene3D Histone deacetylase domain 24 399 IPR037138 -
Rops2g04047 470 PRINTS Histone deacetylase signature 251 269 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 PRINTS Histone deacetylase signature 234 247 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 PRINTS Histone deacetylase signature 175 191 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 PRINTS Histone deacetylase signature 134 154 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 PRINTS Histone deacetylase signature 113 130 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 PRINTS Histone deacetylase superfamily signature 273 283 IPR000286 -
Rops2g04047 470 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Rops2g04047 470 PRINTS Histone deacetylase superfamily signature 188 203 IPR000286 -
Rops2g04047 470 MobiDBLite consensus disorder prediction 395 409 - -
Rops2g04047 470 PIRSF HDAC_I_euk 7 466 IPR003084 GO:0004407|GO:0016575
Rops2g04047 470 MobiDBLite consensus disorder prediction 412 438 - -
Rops2g04047 470 CDD HDAC_classI 31 338 - -
Rops2g04047 470 SUPERFAMILY Arginase/deacetylase 26 391 IPR023696 -
Rops2g04047 470 FunFam Histone deacetylase 24 403 - -
Rops2g04047 470 Pfam Histone deacetylase domain 45 336 IPR023801 -
Rops2g04047 470 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04047 470 PANTHER HISTONE DEACETYLASE 2-RELATED 11 351 - -
Rops2g04047 470 MobiDBLite consensus disorder prediction 394 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04047 Rops-Chr2 73886030 73890588 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04047 K06067 - gmx:100807923 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04047 2 73886030 73890588 Rops2g04047 2 73886030 73890588 ECH