Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g03957 | ATGGTTTCCGATTCAATCGCAGCCGCTCCAATTCCTTCTGCCGCAAACACTAAGAACCCAGGCAAGAAGAAGAGGACCAATAGGTCCGCAAAATTGAAGCAGTATAAGATTGATGCGCGTCGCGAGCAATGGCTATCTCAAGGTGCGGTAAAGAACAACAAGGGGTGCAAGGACGGAGTGGACGATGATGTCCAAGCGCTGCCATCTCCTGTGGAAAAACATGGCAAGTGTTCATTGGAGCAATTGGAAACTCGACGCAGAGGCGAAGAGGATGATGGTTCGATCCATCAAGACAGCGATTTCGAATCTCCGTCCAACAGTCCCACCAGTCCTAATAGTAGCCTCTTGTGTGGTAATGATTCCAGTACGAATTTCACTGGCAGCAGCAGTAGTGGTGGTGGAAGCAGCAGCAGTTCCAGCTGTGCTGGTTGCTGTTCCGGGAATATCACTGAAGAGGATGAAGAGGGAGAAGAAGAAGATGGTGATGATGATGGATGTTTGGATGATTGGGAAGCTATGGCAGATGCTTTAGCTGCCGATGACAATAAGCATCGAAGTCCTTGTTCAGATTCTCCCCCTTCACCTGCTGTGCAAACGCCTCATGAAGTAACTAATAATGGGTCAAATTTAGGATCTCCAAATTCCAAACCTGCTAGTGCCAGATTGGTTCCTTGGGCCTCTGGTAATAACAGAGCTTGGAGAGCTGATGATACTTTTCGACCTCAGAGTTTGCCTAATCTTTCTAAACAGAACAGTTTACCAAACCCAGATCGGCGTTGTGGAGGTGGGGGGCCCTGGTCTCGCACTTCTGGGCCATCCCCTTGTCCAATATGCTGTGAGGATCTTGATTTAACAGACTCGAGTTTTTTGCCGTGCCTTTGTGGGTTTCGGCTTTGCCTCTTCTGCCACAAGAGGATTCTTGAGGAGGATGGTCGTTGTCCTGGGTGTAGGAAGCCATATGAGTGTGAACCTGTTGAGACAGAGGCAAGTGTGCTTGGAGGGAGCTTGACTCTTCGGTTGGCTCGTTCGTGTAGCATGATCGAAAGGAACCAATGTCCTTGTGTTAAGTATAAATTTGAAGGCAGGTCAATATGGTTTTCAAGTTTTTCAAGTTTTGAATAA | 1122 | 0.4786 | MVSDSIAAAPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKNNKGCKDGVDDDVQALPSPVEKHGKCSLEQLETRRRGEEDDGSIHQDSDFESPSNSPTSPNSSLLCGNDSSTNFTGSSSSGGGSSSSSSCAGCCSGNITEEDEEGEEEDGDDDGCLDDWEAMADALAADDNKHRSPCSDSPPSPAVQTPHEVTNNGSNLGSPNSKPASARLVPWASGNNRAWRADDTFRPQSLPNLSKQNSLPNPDRRCGGGGPWSRTSGPSPCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGGSLTLRLARSCSMIERNQCPCVKYKFEGRSIWFSSFSSFE* | 374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g03957 | 373 | MobiDBLite | consensus disorder prediction | 99 | 146 | - | - | |
| Rops2g03957 | 373 | MobiDBLite | consensus disorder prediction | 236 | 271 | - | - | |
| Rops2g03957 | 373 | MobiDBLite | consensus disorder prediction | 188 | 216 | - | - | |
| Rops2g03957 | 373 | MobiDBLite | consensus disorder prediction | 1 | 221 | - | - | |
| Rops2g03957 | 373 | MobiDBLite | consensus disorder prediction | 241 | 255 | - | - | |
| Rops2g03957 | 373 | SUPERFAMILY | RING/U-box | 269 | 325 | - | - | |
| Rops2g03957 | 373 | ProSiteProfiles | Zinc finger RING-type profile. | 275 | 317 | IPR001841 | - | |
| Rops2g03957 | 373 | MobiDBLite | consensus disorder prediction | 150 | 170 | - | - | |
| Rops2g03957 | 373 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 331 | IPR013083 | - | |
| Rops2g03957 | 373 | MobiDBLite | consensus disorder prediction | 76 | 98 | - | - | |
| Rops2g03957 | 373 | Pfam | RING/Ubox like zinc-binding domain | 275 | 321 | - | - | |
| Rops2g03957 | 373 | FunFam | RING/U-box superfamily protein | 268 | 333 | - | - | |
| Rops2g03957 | 373 | CDD | mRING-HC-C4C4_CNOT4 | 275 | 318 | IPR039515 | - | |
| Rops2g03957 | 373 | PANTHER | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | 270 | 347 | IPR039780 | GO:0004842|GO:0030014 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops2g03957 | Rops-Chr2 | 72436905 | 72440732 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops2g03957 | - | - | var:108330419 | 496.893 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops2g03957 | 2 | 72436905 | 72440732 | Rops2g03957 | 2 | 72436905 | 72440732 | ECH |