Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03816 ATGGCAGAAAGTCATTCCCAAAGATCCTCATCAAGCATTCTCGACACTTTGGGGGAAGAAATTGTTAGAATCATAACCCCAGTTTCAATCTGCATGTTCATCGTCGTCATCTTGGTCTCAATTCTCAATTCCAACAACACTCCCTTTGATGAATCATCCATCGCCACCATAGCATACAACGAAACATCCTCGGACTCATCCTGGGACAAATTCCTCGGTGCCCTTTTGAACTCTTTAGCTTTCGTAGTTGTTGTCACTCTCGCCACCTTCGTTTTGGTCCTCCTGTTCTATTTCAGATGCACCAGGTTCTTGAAACTCTACATGGCTTTCTCTGCCTTTGTTGTCTTGGGATTCCTTGGTGGTGAAATCTCACTGTTCTTGATTCAACATTTTAGTACTCCAGTTGATTGCATAACGTTCTTCCTTGCTTTGTGTAATTTTTCTGTTGTGGGTGTTTTGGCTGTGTTTATGTCAAAAATGGCAATTCTTGTGACACAAGGGTACTTGGTTGTTATTGGAATATTGGTTGCTTATTGGTTTACTATGTTGCCTGAGTGGACTACTTGGGCTCTTCTTGTTGCTATGGCTGTGTATGATCTTGCTGCGGTTTTGTTACCTGTTGGGCCGTTAAGGCTTTTGGTAGAGCTAGCAATATCTAGGGAAGAAGAAATTCCAGCTTTGGTTTATGAGGCTAGGCCAGTGAACCATGGTAATTTGGATCCAAGGGATGTTGTAGCTCAGAGGAGGGTGTGGAGAGATAGGAGGATTGAGAATTCAAATCTTTTAACTGGTTCCAATCTGAATAGTAATTCTCTGTTGGGTCATGGCCAAAATGATGGACAATCTCAAGCCAATTCGGATGCTAACACGGGTTTTACTTCAAATGCAAACAGCAATACCACGGATGACACGAATTTGGTTAGGGAAAATGCTTCGGATTTGAATTCTAGTACTTCTTATAGTGTCAGAAATTTGGTAAGAGCTGAAGAGGGACAGTTACGGGTTCAGGTTCAGGAAACTGATTCAGACCTCTCTGTGCCCTTGATTGCTCATGGAATGAATGTGCAACTCCGTAGAGCAGAAGATGCCTTGTCGAATGAAAGTTTGATGCTGGAAGGAATTGGATTGGGTTCATCTGGTGCAATCAAGTTAGGGTTGGGCGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCAGCAATGTATGATTTTATGACGGTGTATGCATGTTATCTTGCTATCATTGCTGGTCTGGGCATAACTTTGATGCTTTTGGCTTTTTATCAGAAAGCTTTGCCCGCTCTTCCTGTGTCAATAGCATTGGGTGTGTTGTTTTATTTCTTGAGTAGGCTATTACTTGAAGTATTTGTTGTACAATGTTCCTTAAATCTCCTGATGTTCTAA 1404 0.4188 MAESHSQRSSSSILDTLGEEIVRIITPVSICMFIVVILVSILNSNNTPFDESSIATIAYNETSSDSSWDKFLGALLNSLAFVVVVTLATFVLVLLFYFRCTRFLKLYMAFSAFVVLGFLGGEISLFLIQHFSTPVDCITFFLALCNFSVVGVLAVFMSKMAILVTQGYLVVIGILVAYWFTMLPEWTTWALLVAMAVYDLAAVLLPVGPLRLLVELAISREEEIPALVYEARPVNHGNLDPRDVVAQRRVWRDRRIENSNLLTGSNLNSNSLLGHGQNDGQSQANSDANTGFTSNANSNTTDDTNLVRENASDLNSSTSYSVRNLVRAEEGQLRVQVQETDSDLSVPLIAHGMNVQLRRAEDALSNESLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSIALGVLFYFLSRLLLEVFVVQCSLNLLMF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03816 467 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops2g03816 467 PRINTS Presenilin family signature 199 216 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops2g03816 467 PRINTS Presenilin family signature 182 189 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops2g03816 467 FunFam Presenilin 357 458 - -
Rops2g03816 467 PANTHER PRESENILIN 5 467 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops2g03816 467 MobiDBLite consensus disorder prediction 267 315 - -
Rops2g03816 467 SMART psh_8 72 453 IPR006639 GO:0004190|GO:0016020
Rops2g03816 467 Pfam Presenilin 18 457 IPR001108 GO:0004190|GO:0016020|GO:0016485
Rops2g03816 467 Gene3D Presenilin 372 459 IPR042524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03816 Rops-Chr2 70405679 70407239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03816 5 467 Miscellaneous Gene Families AT2G29900 60.000 6.84e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03816 K04505 - gmx:100799643 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03816 2 70405679 70407239 Rops2g03816 2 70405679 70407239 ECH