Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03808 ATGGCAATGCAGGAAGCAAGCCCTGCCGCTACTCCTAGTGCTCAAGTTGTTGGCAATGCCTTCGTGGAGCAATATTATCACATTCTGCACCAATCCCCGAACTTGGTGCACAGATTTTATCAGGATTCAAGTTTCTTAAGCAGATCTGACAGCAATGGTGTGATGACAACTGTGACAACTACGAAAGCAATCAATGAAAAGATTATTTCCTTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCATATGAGAAAGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCGCAGACATTCTTTCTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAGAATGACACACTACAGTTGAATTCTGCCTCAGTAAACGTCATCAATGAAAATGCTGAGGCACACATGCCAGAATCAGAGGATGTACATGCTCCAGAACATCTTGTGACGGACCCTGTAACTTCTGCAGAGGGTGAAAACCTTAATAATGGTGCCGAAGTTTATCATCATCAGGACAATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGTACCCTCTAATGATTTTAGTCAGAATGATATCAGTACGATTCATGATTCAACTTCTGCAGTCCAGGATGATGCACCAAAGAAATCATATGCATCAATTGTAATGAAAAGTAACACAGCATCCGGTCATGTCTATGTTCCCAGCCAAGCTGCAAGAGTGGCATCTGCTAGATCCAGTGAACAATTGCCTGCTACTGCCAAATCTACACCCGGGCCTGAGGCATCAGCTCCTAGTAGTGATGGTGCACCTGGGAGCAGCGATGTGCATGAAGAAGCAGAAGGTTACTCCATATACATACGGGATTTGCCATTTAATGCAACGGTTGAACAACTTGAAGAGGCCTTTAAAAAATTTGGTCCTATTAAGCATGGTGGAATCCAAGTTAGAAGCAGTAAGCATGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCACAGTGCACTTGAGGCTTCACCTATTACGATTGGGGAGAGACAAGCCGTTGTTGAGGAAAAGAGAACTACTACACGAGTCAGTGGTAGTGGGAGAGGGAGGTATCCTTCAGGAAGAGGTGGTTTCAGAAGTGAGAGTTTCAGGGGTCGTGGGAAATTTGGTGGTGGAAGGAGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAGTTCTCAGGGCGACCTAGGAGTTCTCAACGGCAAAGTCAAGATGGAGGTGGAAGGGGTGGACGTCAAGGTGTGGGGAACCGTAATGCTACACCAGCATGA 1371 0.4384 MAMQEASPAATPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDSNGVMTTVTTTKAINEKIISLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDTLQLNSASVNVINENAEAHMPESEDVHAPEHLVTDPVTSAEGENLNNGAEVYHHQDNEEEGSVIDEEVAVPSNDFSQNDISTIHDSTSAVQDDAPKKSYASIVMKSNTASGHVYVPSQAARVASARSSEQLPATAKSTPGPEASAPSSDGAPGSSDVHEEAEGYSIYIRDLPFNATVEQLEEAFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMHSALEASPITIGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSESFRGRGKFGGGRSYGRNEFRNQGEFSGRPRSSQRQSQDGGGRGGRQGVGNRNATPA* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03808 456 FunFam Nuclear transport factor 2 family protein 8 137 - -
Rops2g03808 456 Gene3D - 7 137 - -
Rops2g03808 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 378 IPR000504 GO:0003723
Rops2g03808 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Rops2g03808 456 MobiDBLite consensus disorder prediction 424 440 - -
Rops2g03808 456 Gene3D - 290 418 IPR012677 -
Rops2g03808 456 MobiDBLite consensus disorder prediction 376 456 - -
Rops2g03808 456 CDD RRM_SF 304 361 - -
Rops2g03808 456 MobiDBLite consensus disorder prediction 262 289 - -
Rops2g03808 456 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Rops2g03808 456 FunFam Ras GTPase-activating protein-binding protein 1 290 417 - -
Rops2g03808 456 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Rops2g03808 456 MobiDBLite consensus disorder prediction 262 297 - -
Rops2g03808 456 SUPERFAMILY RNA-binding domain, RBD 299 407 IPR035979 GO:0003676
Rops2g03808 456 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 430 IPR039539 -
Rops2g03808 456 SMART rrm1_1 303 374 IPR000504 GO:0003723
Rops2g03808 456 CDD NTF2 13 135 IPR018222 -
Rops2g03808 456 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03808 Rops-Chr2 70336371 70344127 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03808 K24983 - gmx:100801253 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03808 2 70336371 70344127 Rops2g03808 2 70336371 70344127 ECH