Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03763 ATGTCAAAGCTTCAAGTTCATCAACTTAATCAATTAAGGGAGATATTTGCTCGATTTGACATGGACTCAGATGGCAGCTTAACCATGTTAGAGCTAGCAGCACTTCTTAGATCTTTGGGGCTCAAGCCCTCAGGTGACCAAGTCCAAGTTCTGTTAGCCAACATGGACTCAAATGGCAATGGTGCTGTGGAGTTTGATGAATTGGTCAGAACCATATTACCTGACATGGATGCACAGGTTTTGTTGAATCAAGAACAGCTCATAGGGATGTTCAAGTGCTTTGATCGTGATGGGAATGGTTATATATCAGCTGCAGAGTTGGCTGGTGCAATGGCCAAAATGGGTCAGCCCCTCACGTATAGGGAACTCACTGAGATGATCAAAGAGGCTGACATAGATGGTGATGGCGTAATTAGCTTCAATGAGTTTGCCACTATAATGGCTCGCTCTGCCTCTGATTTTTTAGGTAGAGTTTGA 477 0.4382 MSKLQVHQLNQLREIFARFDMDSDGSLTMLELAALLRSLGLKPSGDQVQVLLANMDSNGNGAVEFDELVRTILPDMDAQVLLNQEQLIGMFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKEADIDGDGVISFNEFATIMARSASDFLGRV* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03763 158 Gene3D - 81 156 - -
Rops2g03763 158 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Rops2g03763 158 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Rops2g03763 158 Pfam EF-hand domain pair 10 69 IPR002048 GO:0005509
Rops2g03763 158 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Rops2g03763 158 FunFam Probable calcium-binding protein CML15 1 77 - -
Rops2g03763 158 SUPERFAMILY EF-hand 4 149 IPR011992 -
Rops2g03763 158 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Rops2g03763 158 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Rops2g03763 158 PANTHER CALCIUM BINDING PROTEIN 83 147 - -
Rops2g03763 158 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Rops2g03763 158 SMART efh_1 11 39 IPR002048 GO:0005509
Rops2g03763 158 SMART efh_1 86 114 IPR002048 GO:0005509
Rops2g03763 158 SMART efh_1 122 150 IPR002048 GO:0005509
Rops2g03763 158 SMART efh_1 47 75 IPR002048 GO:0005509
Rops2g03763 158 CDD EFh 86 148 IPR002048 GO:0005509
Rops2g03763 158 FunFam probable calcium-binding protein CML18 78 154 - -
Rops2g03763 158 Gene3D - 1 80 - -
Rops2g03763 158 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Rops2g03763 158 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Rops2g03763 158 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03763 Rops-Chr2 69483430 69483906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03763 8 156 EF-hand Containing Proteins AT1G18530 78.523 1.77e-84 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03763 K13448 - gmx:100795885 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03763 2 69483430 69483906 Rops2g03763 2 69483430 69483906 ECH