Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03408 ATGGCCACCGAGAAAATCCTCAAACCATCCAAATGGTTCTCTAACAAAGGCCTCAGGCTTAGTCTTCATGGTAGAAGATCAAGATCTTCTAACTCATCATTGAGTTCTCCTAGATCTCCTATGTCACTGTGTACAACCCCGAAGAATAACAAAGATGATGTACTCAGAGAGGTTTTCCGTTACTTTGATGGAGATGGAGATGGGAAAATCTCAGCCTATGAGCTAAGGTCATATTTTGGGTCCATGGGAGAGCACATGTCACATGAGGATGCTGAAGGGGTGATCCATGATCTTGATACTGATGGTGACAACTTGTTGGACTTCAATGATTTCACCAAGCTGATGAAGGGGGAAGGCAGGGATGGTGATGATGATGATGAGGATCTTAGAAAAGCTTTTGAGATGTTTGTGTGGGAGAAAGAAGGGTCTGGTTGTATCACCCCAAAAGGGTTACAAAGGATGTTGAACCGTCTTGGAGATCACAAGTCCTATGATGAGTGTGTGGCCATGATTGATGCCTTTGATATTGATCATAATGGGGTCCTTGATTTCAATGAATTTCACCAAATGATGGCCTAA 579 0.4301 MATEKILKPSKWFSNKGLRLSLHGRRSRSSNSSLSSPRSPMSLCTTPKNNKDDVLREVFRYFDGDGDGKISAYELRSYFGSMGEHMSHEDAEGVIHDLDTDGDNLLDFNDFTKLMKGEGRDGDDDDEDLRKAFEMFVWEKEGSGCITPKGLQRMLNRLGDHKSYDECVAMIDAFDIDHNGVLDFNEFHQMMA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03408 192 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Rops2g03408 192 MobiDBLite consensus disorder prediction 24 47 - -
Rops2g03408 192 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
Rops2g03408 192 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Rops2g03408 192 CDD EFh 129 192 IPR002048 GO:0005509
Rops2g03408 192 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Rops2g03408 192 ProSiteProfiles EF-hand calcium-binding domain profile. 162 192 IPR002048 GO:0005509
Rops2g03408 192 Pfam EF-hand domain pair 143 191 IPR002048 GO:0005509
Rops2g03408 192 Pfam EF-hand domain pair 53 116 IPR002048 GO:0005509
Rops2g03408 192 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Rops2g03408 192 PANTHER CALCIUM BINDING PROTEIN 106 191 - -
Rops2g03408 192 FunFam Calmodulin-2 A 48 192 - -
Rops2g03408 192 SMART efh_1 90 118 IPR002048 GO:0005509
Rops2g03408 192 SMART efh_1 54 82 IPR002048 GO:0005509
Rops2g03408 192 SMART efh_1 166 192 IPR002048 GO:0005509
Rops2g03408 192 SMART efh_1 128 158 IPR002048 GO:0005509
Rops2g03408 192 Gene3D - 41 120 - -
Rops2g03408 192 Gene3D - 121 192 - -
Rops2g03408 192 SUPERFAMILY EF-hand 40 191 IPR011992 -
Rops2g03408 192 CDD EFh 55 116 IPR002048 GO:0005509
Rops2g03408 192 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03408 Rops-Chr2 62670938 62672044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03408 1 192 EF-hand Containing Proteins AT3G50770 54.369 5.88e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03408 K13448 - gmx:100500092 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03408 2 62670938 62672044 Rops2g03408 2 62670938 62672044 ECH