Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03371 ATGTTCCTTGTTAGAAGGCAAACCCAGAGTCACCAGGAGAATGAATCCTCATATCAAGATGCAAAGGTGGCTGAACTCAGGGCTGCGATTGGGCCTCTATCTGGGCGTAAATTAAAGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCACGGAACTGGAATGTTGACAAATCCAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGTCAACTTATAAGCCTGAGGAAATCCGTTGGGCTGAAGTAGCACATGAGGGCGAGACTGGCAAAGTCTCCAGAGCTAATTTTCATGATCGACTTGGGAGGACTGTGCTTATTATGAGGCCAGGGATGCAGAACACGACATCAGCAGAAAATAATATCAGGCATTTAGTCTATCTTTTGGAAAATGCTATCCTTAATCTGTCTGAAGGTCAAGAACAAATGTCGTGGTTGATAGACTTCACAGGATTTTCACTTAGTACAAAACTTTCTGTTAAAACAGCTCGTGATATTATTCACATTTTACAAAACCACTATCCAGAAAGGCTTGCTATTGCTTTTCTGCATAATCCACCAAGAATATTTCAGGCTTTCTGGAAGGCCTGCAGATTCTTCCTGGATCCCAAGACAGCCCAGAAGGTGAAGTTTGTTTATCCTAATAATAAGGACAGTGAGGAGCTGATGAAATCACTATTCGACATGGATAATCTTCCTAGTGAATTTGGGGGAAAAGCTACTTTGCAGTATGACCATGAAGAGTTCTCACGATTGATGACTGAGGATGATGTCAAAACTGCCAAGTTCTGGGGACTTGATGATGAAAAGCCCTTCAACTCTAAGACTGGGCTCTCTGGGGCAGAGGTGGCACCAGAACCCGTGCCTGTTTAG 876 0.4315 MFLVRRQTQSHQENESSYQDAKVAELRAAIGPLSGRKLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWAEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTTSAENNIRHLVYLLENAILNLSEGQEQMSWLIDFTGFSLSTKLSVKTARDIIHILQNHYPERLAIAFLHNPPRIFQAFWKACRFFLDPKTAQKVKFVYPNNKDSEELMKSLFDMDNLPSEFGGKATLQYDHEEFSRLMTEDDVKTAKFWGLDDEKPFNSKTGLSGAEVAPEPVPV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03371 291 Gene3D - 3 285 IPR036865 -
Rops2g03371 291 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Rops2g03371 291 SUPERFAMILY CRAL/TRIO N-terminal domain 10 82 IPR036273 -
Rops2g03371 291 PANTHER GH16843P 9 270 - -
Rops2g03371 291 CDD SEC14 99 240 IPR001251 -
Rops2g03371 291 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
Rops2g03371 291 SMART sec14_4 87 242 IPR001251 -
Rops2g03371 291 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Rops2g03371 291 SUPERFAMILY CRAL/TRIO domain 82 258 IPR036865 -
Rops2g03371 291 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Rops2g03371 291 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03371 Rops-Chr2 61972750 61976498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03371 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 26.829 6.49e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03371 K26544 - gmx:100800024 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03371 2 61972750 61976498 Rops2g03371 2 61972750 61976498 ECH