Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03344 ATGGAGAAGTTGGTTTTGCACGCACCTTCAACTGCAACTGTTCCCATTCAACAATTCCCCTTTCAAATTCAACACTCTCTATTTGTATTCACTTACCGAACCCACTTCCACCGAAACCGAACCGAATTGGCATCACAGTTTTGTTGCAGAACCAGACACCGGTATTCCCGATCATTCGCCAACAAACCAGAGCAACTCTTAGTTTGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACTTCGTATTTGGACGATGAAAATGTCTTCTTGTCCCTCAGTGAGAAGCCTGACAGGAACATGGCTTTGCTCGATGATTATGAGACCGAGGAACTCGATTTGGATTCTGGCCCTGACCACCGAAGTGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGGAAGAGTACACTAGCGAACCAAATGATTGGCCAAAAGTTGTCCATAGTTACAGATAAACCTCAAACGACAAGGCATCGAATTCTCTGTATATGTTCTGGCTCTGATTATCAGATGGTACTTTATGACACACCCGGTGTTCTAAAGAAGGAAATGCACAAGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCTGCAATTAATGCTGACTGTGTATTGGTTCTTGTTGATGCATGTAAAGCTCCTGAAAAAATTGACGAATTGTTGGAAGAAGGCATAGGTAACCTCAAAGATAAACCCCCCACTCTACTGATTCTGAACAAGAAGGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACCAATGTTGATGAGGTTATACCAGTTAGTGCCAAATATGGTCATGGGGTTGAAGATGTCAAGGATTGGATACTGTCAAAGCTTCCTAATGGACCAGCTTACTATCCAAAGGACATTGTCAGTGAGCATCCAGAGAGATTTTTTGTTGCTGAGATTGTAAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCCTATGCATGTCAGGTGAATGTTGTAAGCTACAAGGCTCGGCCAGATGCAAAAGATTTCATACAAGTGGAGATTTTGGTTGAGAAAAATTCACAAAAGATTATAATTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGCCTTGACATAGAAGATTTTCTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTAAAAGAAAATTGGCGACAAGATGAAGGGCTTCTTAAGGACTATGGTTATGGGGGTCAGATACGTGTTTTATGA 1260 0.4071 MEKLVLHAPSTATVPIQQFPFQIQHSLFVFTYRTHFHRNRTELASQFCCRTRHRYSRSFANKPEQLLVCEEEEEEEEEETSYLDDENVFLSLSEKPDRNMALLDDYETEELDLDSGPDHRSGYVALLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILCICSGSDYQMVLYDTPGVLKKEMHKLDSMMMKNVRSAAINADCVLVLVDACKAPEKIDELLEEGIGNLKDKPPTLLILNKKDLIKPGEVAKKLEWYEKFTNVDEVIPVSAKYGHGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVSYKARPDAKDFIQVEILVEKNSQKIIIIGREGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKDYGYGGQIRVL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03344 419 NCBIfam small GTP-binding protein domain 124 283 IPR005225 GO:0005525
Rops2g03344 419 Pfam KH domain 324 401 IPR004044 GO:0003723
Rops2g03344 419 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 120 290 IPR030388 GO:0005525
Rops2g03344 419 CDD Era 119 288 IPR030388 GO:0005525
Rops2g03344 419 PANTHER GTPASE ERA 70 404 IPR005662 GO:0003723|GO:0005525
Rops2g03344 419 Hamap GTPase Era [era]. 119 412 IPR005662 GO:0003723|GO:0005525
Rops2g03344 419 FunFam GTPase Era 301 415 - -
Rops2g03344 419 Pfam 50S ribosome-binding GTPase 124 241 IPR006073 GO:0005525
Rops2g03344 419 ProSiteProfiles Type-2 KH domain profile. 321 398 IPR004044 GO:0003723
Rops2g03344 419 CDD KH-II_Era 310 396 - -
Rops2g03344 419 Gene3D - 117 301 IPR027417 -
Rops2g03344 419 NCBIfam GTPase Era 122 395 IPR005662 GO:0003723|GO:0005525
Rops2g03344 419 Coils Coil 416 419 - -
Rops2g03344 419 FunFam GTPase Era 117 300 - -
Rops2g03344 419 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 297 412 IPR009019 GO:0003723
Rops2g03344 419 Gene3D - 302 416 IPR015946 -
Rops2g03344 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03344 Rops-Chr2 61524595 61530525 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03344 K03595 - gmx:100815820 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03344 2 61524595 61530525 Rops2g03344 2 61524595 61530525 ECH