Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02717 ATGGCTCTGCTATCCACTCCACCCATTTACAAAACCTTCCCTTTCTCTCTCACCAAAACGTCGCCGTTTCTCATTTCTATTCTCACTTCCCCTCGCCGCTGCTTCATTTCTTCTTCCGCTAACCACAACTTCTCTGATTTCGGAGAGGCTCACAGCGTTGCAATTTCAACGAAAGGTTCAAAGGTGCTTCTTAAAGGGATGACTTACCCTGAGCTTGAAAAATGGGTTCAATCGCATGGATACAGACCTGGACAGGCTATGATGTTATGGAAGCGTATGTATGGAAACAACATTTGGGCCCATCATATTGATGACTTAGAAGGTTTGAACAAAGATTTCACGAAGATGTTGAGTGACAATGCTGAGTTCAAGGCACTTGCTTTGAAAGAAATTCACACGGCATCTGATGGAACTAGGAAGATTTTATTCACATTGGATGATGGGATGGTCATAGAAACAGTCATCATACCTTGTGATAGAGGCAGGACTACTGTGTGTGTTTCAAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTTTACTGGAAGGATGGGTCTTAAGAGACATCTTACTGCCGCAGAAATAGTAGAGCAGGCCGTTTTTGCCAGACGGATGCTCACAAGTGAAGTTGGTTCCATCACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGGATGAGCAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGTGGGCTTGTTCCACAGCTCAGACGTTTCCTCCATGAATCCAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACGCTTCGGGAGGAGCTTTGCTTTAAACGCAACTATAAAGTTCTATTTGACGATGAAGATGCAAAGAGGCTTATCAAGCTTGTGAAGGGCATTCCTTGCAAGATCAATCTCATCTCCTTCAATCCACATAGTGGATCCTTCTTCAGACCAACCAAAGAGGAAAGGATGCTTGAATTCCGAAATATACTTGCTGGGGCAGGATGTACAGTCTTTCTACGACTCAGTAGAGGTGATGATCAGATGGCTGCTTGTGGTCAATTAGGTAAGCCTGGTAACATTCAAGCCCCATTGCTCCGTGTACCAGAGAAATTCCAAATGGCAGTTGGAAGTTCAGGGTGA 1248 0.4367 MALLSTPPIYKTFPFSLTKTSPFLISILTSPRRCFISSSANHNFSDFGEAHSVAISTKGSKVLLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDDLEGLNKDFTKMLSDNAEFKALALKEIHTASDGTRKILFTLDDGMVIETVIIPCDRGRTTVCVSSQVGCAMNCQFCFTGRMGLKRHLTAAEIVEQAVFARRMLTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLHFSPRKVTVSTSGLVPQLRRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLDLLLETLREELCFKRNYKVLFDDEDAKRLIKLVKGIPCKINLISFNPHSGSFFRPTKEERMLEFRNILAGAGCTVFLRLSRGDDQMAACGQLGKPGNIQAPLLRVPEKFQMAVGSSG* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02717 415 Pfam Radical SAM superfamily 168 306 IPR007197 GO:0003824|GO:0051536
Rops2g02717 415 Pfam 4Fe-4S single cluster domain 172 266 - -
Rops2g02717 415 SFLD Radical SAM 60 392 IPR007197 GO:0003824|GO:0051536
Rops2g02717 415 ProSiteProfiles Radical SAM core domain profile. 159 382 IPR007197 GO:0003824|GO:0051536
Rops2g02717 415 SFLD adenosine C2 methyltransferase (RlmN-like) 60 392 IPR004383 GO:0006364|GO:0008173
Rops2g02717 415 FunFam Dual-specificity RNA methyltransferase RlmN 126 395 - -
Rops2g02717 415 Gene3D - 61 124 - -
Rops2g02717 415 Gene3D Aldolase class I 126 396 IPR013785 -
Rops2g02717 415 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 58 391 IPR027492 GO:0030488|GO:0070475
Rops2g02717 415 SUPERFAMILY Radical SAM enzymes 161 367 - -
Rops2g02717 415 CDD Radical_SAM 172 297 - -
Rops2g02717 415 PANTHER 23S RRNA METHYLTRANSFERASE 40 398 IPR040072 -
Rops2g02717 415 FunFam Radical SAM superfamily protein 61 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02717 Rops-Chr2 45861857 45872189 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02717 K06941 K22544 gmx:100813692 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02717 2 45861857 45872189 Rops2g02717 2 45861857 45872189 ECH