LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g01896	ATGGAAGCACATGCAGGAGCCAATCAGCGCATTGCAAGAATCTCTGCTCATCTTCACCCTTCAAATTTCCAGGAAGGAGGTGATGTTCTTCTCAAGAGAGCTGACTGCAGAGCAAAAGTTCTTCATCTTTATGATGTTGTCAACTCCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACCGGTGCTGTGGTTCGTGGCTTTCTGGGGCAGCCACAACTTGAGAGTGCACTCACTGGCATGGATTTAATAATTATACCTGCTGGTGTGCCAAGGAAACCTGGAATGACAAGGGATGATTTATTTAAAATAAATGCTGGAATTGTGAGGACACTTTGTGAAGGGATTGCCAAGTGCTGCCCTAATGCAATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTTGCAATTGCTGCTGAGGTTTTCAAGAAAGCTGGTACATATGATCCAAAGAGGCTACTGGGTGTTACAACCCTCGATGTTGCGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGACTTGATCCAAGAGAGGTTGATGTTCCAGTGGTGGGAGGTCATGCAGGAGTCACAATATTGCCTCTTTTGTCACAGGTTAAGCCACCTAGTAGCTTCACTGCAGAAGAAACTGAACACCTGACAAATCGGATCCAAAATGGAGGAACAGAAGTAGTTGAGGCAAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGCATATGCAGCAGCCAAGTTTGCTAACTCATGCCTTCGTGGCTTGAAAGGAGAAGCTGGAGTGGTTGAGTGTGCTTTTGTTGATTCTCAGGTTACAGAACTTCCCTTCTTTGCAACCAAGGTTCGTCTTGGTCGTGGTGGAGCAGAAGAGGTATATCAACTGGGTCCCCTGAATGAGTATGAAAGGATTGGATTGGAAAAAGCAAAGAGAGAGTTAGCAGGAAGCATCCAGAAGGGAATAGACTTCATCAAAAAATAA	975	0.4544	MEAHAGANQRIARISAHLHPSNFQEGGDVLLKRADCRAKVLHLYDVVNSPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLIIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEHLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLRGLKGEAGVVECAFVDSQVTELPFFATKVRLGRGGAEEVYQLGPLNEYERIGLEKAKRELAGSIQKGIDFIKK*	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g01896	324	CDD	MDH_glyoxysomal_mitochondrial	41	322	IPR010097	GO:0006099\|GO:0030060
	Rops2g01896	324	Gene3D	-	27	157	-	-
	Rops2g01896	324	ProSitePatterns	Malate dehydrogenase active site signature.	157	169	IPR001252	GO:0006108\|GO:0016615
	Rops2g01896	324	Gene3D	-	158	324	IPR015955	GO:0003824\|GO:0016616
	Rops2g01896	324	SUPERFAMILY	LDH C-terminal domain-like	157	323	IPR015955	GO:0003824\|GO:0016616
	Rops2g01896	324	PIRSF	Lac_mal_DH	15	322	IPR001557	GO:0016616\|GO:0019752
	Rops2g01896	324	NCBIfam	malate dehydrogenase	30	323	IPR010097	GO:0006099\|GO:0030060
	Rops2g01896	324	PANTHER	MALATE AND LACTATE DEHYDROGENASE	37	324	-	-
	Rops2g01896	324	FunFam	Malate dehydrogenase	158	324	-	-
	Rops2g01896	324	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	158	321	IPR022383	GO:0016616
	Rops2g01896	324	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	38	156	IPR036291	-
	Rops2g01896	324	FunFam	Malate dehydrogenase	26	157	-	-
	Rops2g01896	324	Pfam	lactate/malate dehydrogenase, NAD binding domain	38	156	IPR001236	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g01896	Rops-Chr2	29749427	29752638	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g01896	K00026		-	gmx:100170735	587.415

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g01896	2	29749427	29752638	Rops2g01896	2	29749427	29752638	ECH