Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01893 ATGGCTTCATCGGAGATCGAGGTGGTATCATCGGAGTCCAAACCCAACGACCAGCAGCAGCCTCCTATACTCGACGTTTACACTGCCTCTGCTCATGGTGACTTTCACAAATTGAAAACCTTCGTTGAACAACATGGTGCCTCTGTTTCCGTTCCCGATGTTAATGGCTATTATGCTCTTCAATGGGCTTCCCTTAACAACTTCCACGACATTGCCCACTATCTCATTCAGCATGGGGCTGATGTCAATGTTAAAGACAACATGCAACAAACGGCATTGCATTGGGCGGCAGTTCGTGGTTCAATTGCAGCTGCTGATGTGCTCTTGGAGAATGGTGCTCGGGTTGAAGCTGCTGATATAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACATCATTGTAAAGTACCATGCTGATTTTGATGTTCCTGATAATGATGGAAGGAGTCCACTTCATTGGGCTGCATATAAGGGATTTGCTGATACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACACCATTACACTGGGCTGCATTAAGAGGACATGCAGAGGCGTGTGCTGTGCTAGTACATGCTGGCACAAAAGAAGAATTGATGGTGAAGGACCATGCAGGATTCACTCCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCCCCTTTCCTTTCTAATCAACAACGGGCTCATAATAACTACTGGAGAGGCAAACTTTGTAGTGGGATAGTGACAGATCTTGGTTATGCTCCCATTTTATTGTGTATTATAGTCTTTCTCATGATCCTCTTCATCAACTCAGTCGTTGCAGCTCCTAACCTTAAAAAGATTACTGCTGCTGTTGGACTTTGGGCATGGACAGCTCTTTCTCTAGCAGTTGGTTCCTTGATTATGTTTTATAGGTGTAGTAGTAAAGATCCAGGTTATGTAAATCGGCCAGGAGACTTGGGTGCTCAAAGTGATACAGAGGATCCCTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCCACATGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGTTGTGTTGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCTTGGGAACTATGACTTCTTTCCTTAGTGCTGCCGTTGCAGTTCAAAGAATTTGGACATCAACGCCAGCATTACCAGCAGGAGAAACATGGATCCATCACATATTAGTAAGACATCCAGGTCTTGCTGCATTTCTGGTGATGGATGCTTTTGTCTTTCTTGCGACTACAACTTTAACGATAACACAGGCTTCCATGATAGCTCGAAATGTGACCACAAATGAACTTGCAAATTCCTCACGTTATGATTATCTTCGCGGCCCTGATGGGCGGTTCAGAAACCCATATAATCATGGTTTTTGGAAGAATTGTGCTGATTTCCTTTTTCTGGGCAACACGGATGATGATGATATTGCTTGGCCTCCATTACAGCAGGTGGCAGCTTAG 1620 0.4352 MASSEIEVVSSESKPNDQQQPPILDVYTASAHGDFHKLKTFVEQHGASVSVPDVNGYYALQWASLNNFHDIAHYLIQHGADVNVKDNMQQTALHWAAVRGSIAAADVLLENGARVEAADINGYRAVHVAAQYGQTAFLNHIIVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGHAEACAVLVHAGTKEELMVKDHAGFTPVQLAYDKGHRHVAPFLSNQQRAHNNYWRGKLCSGIVTDLGYAPILLCIIVFLMILFINSVVAAPNLKKITAAVGLWAWTALSLAVGSLIMFYRCSSKDPGYVNRPGDLGAQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTMTSFLSAAVAVQRIWTSTPALPAGETWIHHILVRHPGLAAFLVMDAFVFLATTTLTITQASMIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGFWKNCADFLFLGNTDDDDIAWPPLQQVAA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01893 539 Gene3D - 3 142 IPR036770 -
Rops2g01893 539 Pfam Ankyrin repeats (3 copies) 119 184 IPR002110 GO:0005515
Rops2g01893 539 Pfam Ankyrin repeats (3 copies) 29 118 IPR002110 GO:0005515
Rops2g01893 539 ProSiteProfiles Ankyrin repeat profile. 121 154 IPR002110 GO:0005515
Rops2g01893 539 ProSiteProfiles Ankyrin repeat region circular profile. 55 87 - -
Rops2g01893 539 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Rops2g01893 539 FunFam S-acyltransferase 10 141 - -
Rops2g01893 539 ProSiteProfiles Ankyrin repeat region circular profile. 88 119 - -
Rops2g01893 539 Pfam Ankyrin repeat 188 212 IPR002110 GO:0005515
Rops2g01893 539 ProSiteProfiles Ankyrin repeat region circular profile. 155 181 - -
Rops2g01893 539 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 2 520 - -
Rops2g01893 539 ProSiteProfiles DHHC domain profile. 362 412 - -
Rops2g01893 539 SMART ANK_2a 55 84 IPR002110 GO:0005515
Rops2g01893 539 SMART ANK_2a 121 151 IPR002110 GO:0005515
Rops2g01893 539 SMART ANK_2a 155 184 IPR002110 GO:0005515
Rops2g01893 539 SMART ANK_2a 223 252 IPR002110 GO:0005515
Rops2g01893 539 SMART ANK_2a 88 117 IPR002110 GO:0005515
Rops2g01893 539 SMART ANK_2a 188 217 IPR002110 GO:0005515
Rops2g01893 539 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g01893 539 Gene3D - 143 192 IPR036770 -
Rops2g01893 539 Gene3D - 193 246 IPR036770 -
Rops2g01893 539 ProSiteProfiles Ankyrin repeat profile. 55 87 IPR002110 GO:0005515
Rops2g01893 539 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Rops2g01893 539 ProSiteProfiles Ankyrin repeat profile. 188 220 IPR002110 GO:0005515
Rops2g01893 539 FunFam S-acyltransferase 142 250 - -
Rops2g01893 539 Pfam DHHC palmitoyltransferase 362 489 IPR001594 GO:0016409
Rops2g01893 539 ProSiteProfiles Ankyrin repeat region circular profile. 188 212 - -
Rops2g01893 539 SUPERFAMILY Ankyrin repeat 27 245 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01893 Rops-Chr2 29728517 29736260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01893 27 212 Miscellaneous Gene Families AT1G07710 24.339 1.60e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01893 K20032 - gmx:100798740 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01893 2 29728517 29736260 Rops2g01893 2 29728517 29736260 ECH