Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00794 ATGAAAGGTGGAACGGTTCAGATAAGCTGGCACGAGGGCAAACCTGTCTTAACCCTCGATTTTCACCCTCCCTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGTCGATAAAACCAGCAGGAACACAGAAGAAGCTTCCACTAGTTACCTATGTCAATAACCTATCATACCATAGTTCCGCAGTGAATGTTATTCGCTTCTCTTCTTCCGGGGAACTGCTAGCCTCTGGTGCTGATGGAGGTGACCTGATAATATGGAAGCTACATTCTACAGATACCGGTCAGATATGGAAGGTTCTCAAGATGTTACGATCTCATCACAAGGACATTCTGGACCTCCAGTGGTCTACTGATGCCTCATATCTAATATCTGGATCGGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACATTGGAAGCCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGAAAGTATGTTACGTCTCTCAGTTCTGACCGGACTTGCCGAATTTACATCAATAAGCCTCATAAATCAAAGGGCAACGAGAAAATGAATTATGTTTGCCAGCAAGTTATTTCCAAGGCAGAGCAGCCATTATTAAAGAATTCTAAGTTGACAAAATTTCATCTCTTCCATGATGAGACATTGCCATCTTTCTTCAGAAGATTAGCCTGGTCTCCTGATGGTTCATTTCTACTTGTGCCTGCAGGATCTTACAAAATTAATAATGCATCTGAATCTGTAAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTCGGCCTGCTATACAGCTTCCTTGTGCTAGCAAAGCTGTTGTAGCTGTTCGTTTCTGCCCCATATTTTTTAACCTTCGAGGAACAAACTCAGCTGGGTTATTTAAGCTCCCCTATCGCATCATATTTGCTGTGGCCACTTTGAATTCATTGTACGTTTATGACACTGAGAGCACTTCTCCAATAGCTATATTAGCTGGTCTTCACTATGCTGCAATAACAGATATTACCTGGTCACCTGATGCCCATTATTTGGCATTGTCCTCGCAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGGTGAACTTGGATCACCTTTCTCTTTATCAGAAGGAAAGGTCTCAGACAAGGATAGTAAGAGCACCCTGCAGACAACCAATGACACTGTCATTGTACCAGCTGAGAATGTTGGTGCAGTTGTAGCAGAAAGCAGGAAAATGGAAGAAGAGAAGGCTGATGACATGGTCATTGAAGCATCTGGGAGTATTGATGCAGTCATCGCAGAAAGCAGGAAAAATGTTACACAAGAGAAGGCTGATGACAGTAGGAAAAATGAAGCAGAAGATAAAGCTGATCACATGGTCATTGAGGCAACTGAGAATTTTGAAGGAGTTGTAACAGATAGTAGGAAAAATGAAGCAGAAGAGAAGGCTGATGGCATGGTCATTGAGACAACTGGGAGTATTGGTGCAGCGGCATTAGATAATATAAAAACTGAAACAGAAGATAAGGCAGATAAACAACCAGCTAATCCAGGTGGTGAACAATCTGTAGCAGAAGAGAAGACAAAGGAACCACAATCAAGTTTACATGCCATAAAATCAAGGCCAGAAGAAAAGGCAGGGGAAAAATTGTCCAGTTCAAAAAGTACGCCCTTATCAAATAAGCCAGCCAGGAAGCGTATAACTCCTATTGCAATTGATCCATGA 1740 0.4253 MKGGTVQISWHEGKPVLTLDFHPPSATLATAGADFDIKFWSIKPAGTQKKLPLVTYVNNLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHSTDTGQIWKVLKMLRSHHKDILDLQWSTDASYLISGSVDNCCIIWDVNKGTNLQTLEAHAHYVQGVAWDPLGKYVTSLSSDRTCRIYINKPHKSKGNEKMNYVCQQVISKAEQPLLKNSKLTKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKINNASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFNLRGTNSAGLFKLPYRIIFAVATLNSLYVYDTESTSPIAILAGLHYAAITDITWSPDAHYLALSSQDGFCSLVEFENGELGSPFSLSEGKVSDKDSKSTLQTTNDTVIVPAENVGAVVAESRKMEEEKADDMVIEASGSIDAVIAESRKNVTQEKADDSRKNEAEDKADHMVIEATENFEGVVTDSRKNEAEEKADGMVIETTGSIGAAALDNIKTETEDKADKQPANPGGEQSVAEEKTKEPQSSLHAIKSRPEEKAGEKLSSSKSTPLSNKPARKRITPIAIDP* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00794 579 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Rops2g00794 579 SMART WD40_4 327 367 IPR001680 GO:0005515
Rops2g00794 579 SMART WD40_4 53 92 IPR001680 GO:0005515
Rops2g00794 579 SMART WD40_4 2 41 IPR001680 GO:0005515
Rops2g00794 579 SMART WD40_4 101 140 IPR001680 GO:0005515
Rops2g00794 579 SMART WD40_4 143 182 IPR001680 GO:0005515
Rops2g00794 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Rops2g00794 579 MobiDBLite consensus disorder prediction 476 579 - -
Rops2g00794 579 Gene3D - 4 256 IPR015943 GO:0005515
Rops2g00794 579 SUPERFAMILY WD40 repeat-like 13 401 IPR036322 GO:0005515
Rops2g00794 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Rops2g00794 579 MobiDBLite consensus disorder prediction 528 555 - -
Rops2g00794 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Rops2g00794 579 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 579 IPR045145 GO:0006335
Rops2g00794 579 MobiDBLite consensus disorder prediction 476 490 - -
Rops2g00794 579 MobiDBLite consensus disorder prediction 441 462 - -
Rops2g00794 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Rops2g00794 579 Gene3D - 257 483 IPR015943 GO:0005515
Rops2g00794 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Rops2g00794 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Rops2g00794 579 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Rops2g00794 579 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Rops2g00794 579 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Rops2g00794 579 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Rops2g00794 579 Pfam WD domain, G-beta repeat 60 92 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00794 25 181 Miscellaneous Gene Families AT5G08390 25.949 1.78e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00794 K10751 - gmx:547606 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00794 2 11354744 11359014 Rops2g00794 2 11354744 11359014 ECH