Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00610 ATGTTGCTGGTAAAGTTGTTCACATCACAGGTGCTTCGTCTGTATTTGGCGTACGAGTATGCTAAGAGAGGTGCTCGTTTAGCACTTTCTGCAAGGAGGGAGACTGCACTGAGGGAAGTTGCGGATAGAGCGCGTGATTTTGGATCTCCTGATATTATTATATTGCGTGCAGATGTTTCTAAAGTTGAAGACTGTAGTCGATTAGTTGATGAAACTGTGAATCATTTTGGAAGACTGGATCATCTGGTTAACAATGCAGCAATTGGCACTTCCAACTTGTTTGAAGAAATACCTGATATCACCAATTTGAGACCTATCATGGAAACAAACTTTTGGGGATCAGTTTACACAACCCGTTTTGCCTTACCATACCTCAGAAACAGCAGAGGCAAAATTGTGGTCATGTCATCTGCTGATTCTTGGATGCCTGCACCCAGAAGGAATGTGTATAATGCAAGCAAAGCCGCGTTGGTGAGTCTTTATGAAACATTGAGGGTGGAAGTTGGGTCCGACATAGGTATCACTATCGTGACACCCAGTTACATAGAATCTGAATTGACCAAAGGGAAGTTCTTAATGGCAGATGGCAAGATGAGCGTGGACCAAGATTTGAGAGATGTTGAAGTGAGTGCAACGCCGGTGGGATCAGTAAGTGGTTGTGCCAAAGCAATAATTAATAGCACATTAAGAGGAGATAGGTACTTGACAATACCTGCATGGTTCAGAATGACGTATGTGCTGAAAGTGTTGTGCCCTGAGTTGGTTGAGTGGAGCTTCAAAATGCTGTATCTCACTGGATCAGGAACTCCAGCTAAGGAAGCCCCTAGCAAAAAGATTTTGGATGGTACTGGTATCAAGAAATTGTTTTATCCCTCTTCAATTCAATCACCTGAGGTCAAGACTGAGTGA 909 0.4312 MLLVKLFTSQVLRLYLAYEYAKRGARLALSARRETALREVADRARDFGSPDIIILRADVSKVEDCSRLVDETVNHFGRLDHLVNNAAIGTSNLFEEIPDITNLRPIMETNFWGSVYTTRFALPYLRNSRGKIVVMSSADSWMPAPRRNVYNASKAALVSLYETLRVEVGSDIGITIVTPSYIESELTKGKFLMADGKMSVDQDLRDVEVSATPVGSVSGCAKAIINSTLRGDRYLTIPAWFRMTYVLKVLCPELVEWSFKMLYLTGSGTPAKEAPSKKILDGTGIKKLFYPSSIQSPEVKTE* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00610 302 Gene3D - 14 266 - -
Rops2g00610 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 261 IPR036291 -
Rops2g00610 302 Pfam short chain dehydrogenase 15 189 IPR002347 -
Rops2g00610 302 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 137 165 IPR020904 GO:0016491
Rops2g00610 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 IPR002347 -
Rops2g00610 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 IPR002347 -
Rops2g00610 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 IPR002347 -
Rops2g00610 302 PANTHER RETINOL DEHYDROGENASE-RELATED 16 266 - -
Rops2g00610 302 PRINTS Glucose/ribitol dehydrogenase family signature 150 169 IPR002347 -
Rops2g00610 302 PRINTS Glucose/ribitol dehydrogenase family signature 77 88 IPR002347 -
Rops2g00610 302 PRINTS Glucose/ribitol dehydrogenase family signature 124 140 IPR002347 -
Rops2g00610 302 PRINTS Glucose/ribitol dehydrogenase family signature 170 187 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00610 Rops-Chr2 8705356 8707202 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00610 19 217 Miscellaneous Gene Families AT2G29150 32.353 5.42e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00610 K22418 - egr:104416667 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00610 2 8705356 8707202 Rops2g00610 2 8705356 8707202 ECH